PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | PDK_30s695601g004 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Arecales; Arecaceae; Coryphoideae; Phoeniceae; Phoenix
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Family | NAC | ||||||||
Protein Properties | Length: 286aa MW: 32271.9 Da PI: 5.3559 | ||||||||
Description | NAC family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | NAM | 167.8 | 3.7e-52 | 10 | 138 | 1 | 129 |
NAM 1 lppGfrFhPtdeelvveyLkkkvegkkleleevikevdiykvePwdLpkkvkaeekewyfFskrdkkyatgkrknratksgyWkatgkdkev 92 lppGfrF P+deelv++yL kkv++++++ ++ evd+++ ePw+Lp+ +k + +ewyfFs rd+kyatg+r+nratksgyWkatgkd++v PDK_30s695601g004 10 LPPGFRFYPSDEELVCHYLYKKVANERVSG-GTMVEVDLHTREPWELPEVAKLSANEWYFFSFRDRKYATGSRSNRATKSGYWKATGKDRTV 100 79*************************999.88***************88888999************************************ PP NAM 93 lsk.kgelvglkktLvfykgrapkgektdWvmheyrle 129 ++ ++++vg++ktLvfy+grap+g kt+Wvmhe+rle PDK_30s695601g004 101 YDPtTHAVVGMRKTLVFYRGRAPNGMKTSWVMHEFRLE 138 **967778***************************985 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF101941 | 2.62E-61 | 8 | 156 | IPR003441 | NAC domain |
PROSITE profile | PS51005 | 59.063 | 10 | 156 | IPR003441 | NAC domain |
Pfam | PF02365 | 4.9E-28 | 11 | 137 | IPR003441 | NAC domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 286 aa Download sequence Send to blast |
MGLRDIESTL PPGFRFYPSD EELVCHYLYK KVANERVSGG TMVEVDLHTR EPWELPEVAK 60 LSANEWYFFS FRDRKYATGS RSNRATKSGY WKATGKDRTV YDPTTHAVVG MRKTLVFYRG 120 RAPNGMKTSW VMHEFRLENP HTPPKEDWVL CRVFHKKQGD SVNCSLGNDQ QNNIGWSSSH 180 LESSPLNDHA MPDGCNEQMG SSFPTVPYQE GNSSNTFLNL AVLHYNFLGF PQEVDSTTMM 240 GMDSGGGDDD FGLMLDVGMD DHDLVEGETA NTGSMKFQGG KDQLFF |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
3ulx_A | 6e-50 | 1 | 157 | 1 | 169 | Stress-induced transcription factor NAC1 |
Search in ModeBase |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Transcription activator. Involved in molecular mechanisms regulating shoot apical meristem (SAM) formation during embryogenesis and organ separation. Required for axillary meristem initiation and separation of the meristem from the main stem. May act as an inhibitor of cell division. {ECO:0000269|PubMed:12837947, ECO:0000269|PubMed:17122068}. |
Regulation -- Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | INDUCTION: By BRM, at the chromatin level, and conferring a very specific spatial expression pattern. {ECO:0000269|PubMed:16854978}. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_008810507.1 | 0.0 | protein CUP-SHAPED COTYLEDON 3 | ||||
Swissprot | Q9S851 | 8e-63 | NAC31_ARATH; Protein CUP-SHAPED COTYLEDON 3 | ||||
TrEMBL | A0A2H3Z9M2 | 0.0 | A0A2H3Z9M2_PHODC; protein CUP-SHAPED COTYLEDON 3 | ||||
STRING | XP_008810507.1 | 0.0 | (Phoenix dactylifera) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP697 | 38 | 166 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT4G28530.1 | 2e-84 | NAC domain containing protein 74 |
Publications ? help Back to Top | |||
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