PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | PDK_30s694021g003 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Arecales; Arecaceae; Coryphoideae; Phoeniceae; Phoenix
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Family | MYB_related | ||||||||
Protein Properties | Length: 186aa MW: 21207.6 Da PI: 7.8587 | ||||||||
Description | MYB_related family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | Myb_DNA-binding | 45.3 | 2e-14 | 120 | 165 | 2 | 47 |
SSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS Myb_DNA-binding 2 grWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47 ++WT+eE+ l++++ + + g+Wk+I+r + +Rt+ q+ s+ qk+ PDK_30s694021g003 120 KPWTEEEHRLFLQGLATHRRGDWKAISRNFVVTRTPAQVASHAQKF 165 58******************************************98 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SMART | SM00717 | 6.6E-4 | 12 | 64 | IPR001005 | SANT/Myb domain |
SuperFamily | SSF46689 | 8.22E-10 | 14 | 70 | IPR009057 | Homeodomain-like |
CDD | cd00167 | 0.00516 | 15 | 62 | No hit | No description |
PROSITE profile | PS50090 | 5.122 | 16 | 62 | IPR017877 | Myb-like domain |
PROSITE profile | PS51294 | 18.894 | 114 | 170 | IPR017930 | Myb domain |
SuperFamily | SSF46689 | 8.97E-16 | 115 | 170 | IPR009057 | Homeodomain-like |
TIGRFAMs | TIGR01557 | 8.6E-15 | 117 | 169 | IPR006447 | Myb domain, plants |
Gene3D | G3DSA:1.10.10.60 | 1.3E-10 | 118 | 161 | IPR009057 | Homeodomain-like |
SMART | SM00717 | 4.8E-12 | 118 | 168 | IPR001005 | SANT/Myb domain |
Pfam | PF00249 | 8.8E-12 | 120 | 164 | IPR001005 | SANT/Myb domain |
CDD | cd00167 | 1.54E-9 | 121 | 166 | No hit | No description |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 186 aa Download sequence Send to blast |
MASSSGIGSL QSPTEWSWYE NKIFELALVE YPEGTPNRWP LITAKLPGKS LGQVLHHYQV 60 LIDDLYLIES GKVEIPDYRD EEEGGNSGDG RCMTPKQHPS DGPNIASGSR QQGQERKKGK 120 PWTEEEHRLF LQGLATHRRG DWKAISRNFV VTRTPAQVAS HAQKFFHRQQ QNQEHQRKSI 180 HDITQP |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
2cjj_A | 5e-15 | 1 | 86 | 1 | 79 | RADIALIS |
Search in ModeBase |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Involved in the dorsovental asymmetry of flowers. Promotes ventral identity. {ECO:0000269|PubMed:11937495, ECO:0000269|PubMed:9118809}. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_026660381.1 | 1e-138 | transcription factor DIVARICATA-like | ||||
Swissprot | Q8S9H7 | 3e-48 | DIV_ANTMA; Transcription factor DIVARICATA | ||||
TrEMBL | A0A3Q0I0I6 | 1e-136 | A0A3Q0I0I6_PHODC; transcription factor DIVARICATA-like | ||||
STRING | XP_008789580.1 | 1e-137 | (Phoenix dactylifera) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP2895 | 36 | 87 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G04760.1 | 3e-50 | MYB family protein |
Publications ? help Back to Top | |||
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