PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | PDK_30s693301g004 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Arecales; Arecaceae; Coryphoideae; Phoeniceae; Phoenix
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Family | M-type_MADS | ||||||||
Protein Properties | Length: 211aa MW: 24152.7 Da PI: 9.7458 | ||||||||
Description | M-type_MADS family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | SRF-TF | 73.9 | 1.3e-23 | 9 | 53 | 1 | 45 |
S---SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSE CS SRF-TF 1 krienksnrqvtfskRrngilKKAeELSvLCdaevaviifsstgk 45 kr en+s rqvt+skRr+gilKKA+ELS+LCd+++ +++fs+tgk PDK_30s693301g004 9 KRLENTSGRQVTYSKRRAGILKKAKELSILCDIDIILLMFSPTGK 53 789*****************************************8 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS50066 | 25.189 | 1 | 53 | IPR002100 | Transcription factor, MADS-box |
SMART | SM00432 | 9.9E-32 | 1 | 60 | IPR002100 | Transcription factor, MADS-box |
CDD | cd00120 | 4.95E-26 | 2 | 56 | No hit | No description |
SuperFamily | SSF55455 | 3.01E-26 | 2 | 95 | IPR002100 | Transcription factor, MADS-box |
PRINTS | PR00404 | 6.3E-19 | 3 | 23 | IPR002100 | Transcription factor, MADS-box |
Pfam | PF00319 | 1.6E-20 | 11 | 56 | IPR002100 | Transcription factor, MADS-box |
PRINTS | PR00404 | 6.3E-19 | 23 | 38 | IPR002100 | Transcription factor, MADS-box |
PRINTS | PR00404 | 6.3E-19 | 38 | 59 | IPR002100 | Transcription factor, MADS-box |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0003677 | Molecular Function | DNA binding | ||||
GO:0046983 | Molecular Function | protein dimerization activity |
Sequence ? help Back to Top |
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Protein Sequence Length: 211 aa Download sequence Send to blast |
MGRVKLKIKR LENTSGRQVT YSKRRAGILK KAKELSILCD IDIILLMFSP TGKPTTCLGE 60 RSNIEDVIAK FAQLTPQERA KRKLESLEAL KKTFKKLDHD VNIQDFLGSS GQTVEELTNH 120 SRLLQAQISE VQKRLSYWSE PEKINSIDHI RAMEESLKHS LNQVQLQKFQ NGIHLPLEIG 180 GEQQSSNISW LHDNEGQPMM LPEDTNLPRQ R |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
5f28_A | 6e-13 | 1 | 92 | 1 | 90 | MEF2C |
5f28_B | 6e-13 | 1 | 92 | 1 | 90 | MEF2C |
5f28_C | 6e-13 | 1 | 92 | 1 | 90 | MEF2C |
5f28_D | 6e-13 | 1 | 92 | 1 | 90 | MEF2C |
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Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Probable transcription factor that forms a heterodimer with the MADS-box protein AGL104 and is involved in the regulation of pollen maturation at the late stages of pollen development and pollen tube growth. {ECO:0000269|PubMed:19211705}. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_008802579.1 | 1e-147 | agamous-like MADS-box protein AGL65 isoform X1 | ||||
Swissprot | Q7X9I0 | 3e-83 | AGL65_ARATH; Agamous-like MADS-box protein AGL65 | ||||
TrEMBL | A0A2H3YRH8 | 1e-146 | A0A2H3YRH8_PHODC; agamous-like MADS-box protein AGL65 isoform X1 | ||||
STRING | XP_008802579.1 | 1e-147 | (Phoenix dactylifera) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP4626 | 36 | 59 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G18750.1 | 1e-74 | AGAMOUS-like 65 |
Publications ? help Back to Top | |||
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