PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID PDK_30s692531g003
Organism
Phoenix dactylifera
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Arecales; Arecaceae; Coryphoideae; Phoeniceae; Phoenix
Family WRKY
Protein Properties Length: 327aa    MW: 36307.4 Da    PI: 4.8741
Description WRKY family protein
Gene Model
Gene Model ID Type Source Coding Sequence
PDK_30s692531g003genomePDKView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1WRKY102.62.2e-32115171258
                        --SS-EEEEEEE--TT-SS-EEEEEE-STT---EEEEEE-SSSTTEEEEEEES--SS CS
               WRKY   2 dDgynWrKYGqKevkgsefprsYYrCtsagCpvkkkversaedpkvveitYegeHnh 58 
                        dDgy+WrKYGqK++k+s++prsYYrCt ++C++kk+vers++dp+++++tYeg H h
  PDK_30s692531g003 115 DDGYKWRKYGQKSIKNSPNPRSYYRCTNPRCNAKKQVERSTDDPETLIVTYEGLHLH 171
                        8******************************************************99 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5081127.944109174IPR003657WRKY domain
Gene3DG3DSA:2.20.25.805.2E-30111172IPR003657WRKY domain
SuperFamilySSF1182904.84E-27111172IPR003657WRKY domain
SMARTSM007741.1E-37114173IPR003657WRKY domain
PfamPF031063.6E-26115171IPR003657WRKY domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 327 aa     Download sequence    Send to blast
MEEVYESEAN WLDGSCEELV RELLDDTTPF FVLPKVTEPE PDTSRESMIN KLISTVYSGP  60
TIGDVESALS VTFQSGDSDG HGGSRPTISL PEKGLSKMES KYTLRIKTYG NGLADDGYKW  120
RKYGQKSIKN SPNPRSYYRC TNPRCNAKKQ VERSTDDPET LIVTYEGLHL HYTYSHFFLS  180
RPHDYSTANL HVSKKPRIQS MSMQTPQVAD CPLTESMVWS PSVMEQQQLQ PGAAGDQSPE  240
GEVLEVGVQS PVRQDISQHG FLEDLMQSRQ GLLEDVVPLL VRKPSNSTTS SYDPHSTSPA  300
SSPSYSSLSW STPSSSYLDV GIFSGII
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1wj2_A4e-211131711674Probable WRKY transcription factor 4
2lex_A4e-211131711674Probable WRKY transcription factor 4
Search in ModeBase
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_008777314.10.0probable WRKY transcription factor 49
TrEMBLA0A2H3X2G50.0A0A2H3X2G5_PHODC; probable WRKY transcription factor 49
STRINGXP_008777314.10.0(Phoenix dactylifera)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP75253551
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G43290.13e-48WRKY DNA-binding protein 49