PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID PDK_30s691331g001
Organism
Phoenix dactylifera
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Arecales; Arecaceae; Coryphoideae; Phoeniceae; Phoenix
Family B3
Protein Properties Length: 434aa    MW: 47763 Da    PI: 5.0934
Description B3 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
PDK_30s691331g001genomePDKView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1B385.64.3e-27163253187
                        EEEE-..-HHHHTT-EE--HHH.HTT......---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-S CS
                 B3   1 ffkvltpsdvlksgrlvlpkkfaeeh......ggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldg 86 
                        f k+ltpsdv+k++rlv+pkk+a+++      +++   +  l ++d+++r W ++++y+k+s++yv+tkGW++Fvk++gL+++D+v+F++ +
  PDK_30s691331g001 163 FTKELTPSDVGKLNRLVIPKKHATRFfpavspESD--DELLLEFQDLESRLWVFRYCYWKSSQSYVFTKGWNKFVKEKGLQAKDSVTFYRCE 252
                        89**************************9865434..4457999*********************************************655 PP

                        S CS
                 B3  87 r 87 
                        +
  PDK_30s691331g001 253 E 253
                        4 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:2.40.330.102.1E-33160255IPR015300DNA-binding pseudobarrel domain
CDDcd100173.29E-25162250No hitNo description
SuperFamilySSF1019362.49E-27162257IPR015300DNA-binding pseudobarrel domain
PfamPF023621.1E-24163254IPR003340B3 DNA binding domain
SMARTSM010193.3E-23163265IPR003340B3 DNA binding domain
PROSITE profilePS5086312.435163267IPR003340B3 DNA binding domain
Gene3DG3DSA:2.40.330.101.5E-7329360IPR015300DNA-binding pseudobarrel domain
SuperFamilySSF1019361.8E-7329362IPR015300DNA-binding pseudobarrel domain
PROSITE profilePS508637.288332372IPR003340B3 DNA binding domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 434 aa     Download sequence    Send to blast
MPSRRTTAPS SLLFPRFPSE EEDCRGFPLF SVAGSACNMF QAKDDDVSMV DAGSVVEVGS  60
MLSMTTTATA AREAAKLVNA VQGCRAATKW ALGRTDLRPP QQDLAGHVQV GARGGESRFA  120
EYLRVMQSPQ ASPVAPPRGS PRSGIGSGGC GGGGSCNTCC EMFTKELTPS DVGKLNRLVI  180
PKKHATRFFP AVSPESDDEL LLEFQDLESR LWVFRYCYWK SSQSYVFTKG WNKFVKEKGL  240
QAKDSVTFYR CEEREGPRRA YCMIEAVPCR QGRGQENGNV TFGLGLSYKI EVDEEEEEEE  300
VISGPMAASG VTQGEQEMKG VKIFGVWLST IFTKGWNKFV KEKGLQAKDS VTFYRCEERE  360
GPRRAYCMIE AVPCRQGRGQ ENGNVTFGLG LSYKIEVDEE EEEEEVISGP MAASGVTQGE  420
QEMKGVKIFG VWVS
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5os9_A5e-34162251796B3 domain-containing transcription factor NGA1
5os9_B5e-34162251796B3 domain-containing transcription factor NGA1
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_008800060.21e-134AP2/ERF and B3 domain-containing transcription factor At1g50680-like isoform X1
TrEMBLA0A2H3YK991e-133A0A2H3YK99_PHODC; AP2/ERF and B3 domain-containing transcription factor At1g50680-like isoform X1
STRINGXP_008800116.11e-134(Phoenix dactylifera)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP1971158
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G50680.13e-32RAV family protein