PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | PDK_30s689731g003 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Arecales; Arecaceae; Coryphoideae; Phoeniceae; Phoenix
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Family | MYB_related | ||||||||
Protein Properties | Length: 106aa MW: 11834.3 Da PI: 10.1018 | ||||||||
Description | MYB_related family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | Myb_DNA-binding | 32.3 | 2.3e-10 | 15 | 59 | 3 | 45 |
SS-HHHHHHHHHHHHHTTTT...-HHHHHHHHTTTS-HHHHHHHHH CS Myb_DNA-binding 3 rWTteEdellvdavkqlGgg...tWktIartmgkgRtlkqcksrwq 45 +WT E +l+ a +++ ++ +W+++a+ +g g+t++++k ++ PDK_30s689731g003 15 SWTLKENKLFELALAKYDKEtpdRWHKVAQAVG-GKTPEEVKRHYE 59 7******************9*************.**********96 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS51293 | 10.509 | 11 | 66 | IPR017884 | SANT domain |
SMART | SM00717 | 2.0E-9 | 12 | 64 | IPR001005 | SANT/Myb domain |
SuperFamily | SSF46689 | 2.92E-13 | 14 | 69 | IPR009057 | Homeodomain-like |
Gene3D | G3DSA:1.10.10.60 | 2.5E-5 | 15 | 68 | IPR009057 | Homeodomain-like |
CDD | cd00167 | 5.10E-8 | 15 | 62 | No hit | No description |
Pfam | PF00249 | 1.7E-8 | 15 | 59 | IPR001005 | SANT/Myb domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 106 aa Download sequence Send to blast |
MASSPQRSSG GSNTSWTLKE NKLFELALAK YDKETPDRWH KVAQAVGGKT PEEVKRHYEL 60 LVEDIKYIEA GHVPFPNYRS SSSRGGGSAE VLKAALKQKL ERNKFA |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
2cjj_A | 5e-34 | 8 | 81 | 3 | 76 | RADIALIS |
Search in ModeBase |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Involved in the dorsovental asymmetry of flowers. Promotes dorsal identity. {ECO:0000269|PubMed:15790677}. |
Regulation -- Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | INDUCTION: Up-regulated by both CYC and DICH. {ECO:0000269|PubMed:15790677, ECO:0000269|PubMed:16236768}. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_008810736.1 | 1e-73 | protein RADIALIS-like 3 | ||||
Swissprot | Q58FS3 | 7e-34 | RAD_ANTMA; Transcription factor RADIALIS | ||||
TrEMBL | A0A2H3ZAV4 | 3e-72 | A0A2H3ZAV4_PHODC; protein RADIALIS-like 3 | ||||
STRING | XP_008810736.1 | 5e-73 | (Phoenix dactylifera) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP270 | 38 | 230 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G75250.2 | 2e-32 | RAD-like 6 |
Publications ? help Back to Top | |||
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