PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

PDK_30s686701g002

Organism

Phoenix dactylifera

Taxonomic ID

42345

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Arecales; Arecaceae; Coryphoideae; Phoeniceae; Phoenix

Family

MYB

Protein Properties

Length: 1610aa MW: 174045 Da PI: 5.7066

Description

MYB family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
PDK_30s686701g002	genome	PDK	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	Myb_DNA-binding	21.8	4.4e-07	690	731	3	46
SS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHH CS Myb_DNA-binding 3 rWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqk 46 +WT+ E e + + + +G++ +++I++ ++ ++t +c+++++k PDK_30s686701g002 690 PWTQGEKEVFMEMLATFGKD-FTKISSFLN-HKTTADCIEFYYK 731 8***************99.*****.*********98 PP
2	Myb_DNA-binding	33.9	7.5e-11	897	938	2	45
SSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHH CS Myb_DNA-binding 2 grWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwq 45 g WT eE +++a ++G++ ++ I+r++g +R+++qck ++ PDK_30s686701g002 897 GDWTDEEKSMFIRALSMYGKD-FAMISRCVG-TRSREQCKIFFS 938 78***************99.*****.******8775 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SuperFamily	SSF46689	8.22E-14	674	736	IPR009057	Homeodomain-like
PROSITE profile	PS51293	14.371	686	737	IPR017884	SANT domain
SMART	SM00717	2.3E-7	687	735	IPR001005	SANT/Myb domain
Gene3D	G3DSA:1.10.10.60	8.3E-5	689	734	IPR009057	Homeodomain-like
Pfam	PF00249	1.9E-5	690	731	IPR001005	SANT/Myb domain
PROSITE profile	PS51293	13.784	894	945	IPR017884	SANT domain
Gene3D	G3DSA:1.10.10.60	1.1E-6	894	939	IPR009057	Homeodomain-like
SMART	SM00717	2.8E-10	895	943	IPR001005	SANT/Myb domain
Pfam	PF00249	1.1E-8	897	937	IPR001005	SANT/Myb domain
SuperFamily	SSF46689	1.09E-11	897	946	IPR009057	Homeodomain-like
CDD	cd00167	4.48E-8	899	937	No hit	No description

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 1610 aa Download sequence Send to blast
MPFVSGVFDA SGTGQYRQGG GYHQLYPENP GAHGCTPSRS DRFWLEDEGF RPSSGRYGGG 60 GRSSSGGSRE SRGSFRRSPY WDSGDFSRQQ HHDPPVTAQR SVAVPISPAS QPPLKDQNDK 120 TGGAVDDGSG TGHRFDRDHS LGAMSWKPLK WSRAGSLSST KTGRSESEET GLEVLVPTGK 180 ETPIRSPVTS PVPSDEGASK KKPRLGWGQG LAKYEKQKVE GSLDVSGTAA KGALNETSPK 240 VVGLAGCPSP ATPGSVTCSS SPAGIEEKPC SKVVNGDNDT SHYGVSPEEF SNKLGHMEGN 300 PINMLTTLLA DLWQPDDAFA GDCTFSRQTA MNKLLLLKED ISKELEKTEW EIDLFENELK 360 SLNTDPENDP RQSSVTSPAN IAPELCIASS NVASKDSNPS KDHEFTSSAV TLVENDALPT 420 IALNEHDAEL KGVDVDSLQA VLSRFNNSAS SRKGVCDHET EKLAECSKIV ENDRFKVPEI 480 QHFVLSDDVE RTATVCDLGD GSRGEAGSSN DNGNSEASLH GKTDCNLITL IMASNRDAAK 540 KASQGAPPFV EGGSAIAFYK KTSYKVKWTF AFHMFIANEL MVVIACERSE NISAQCLPYF 600 WTLSCHRVYL CGLEAGNLTA GNLTLVPTTE IVEFTSKLLS DSQIKLYRNN LKMPSLILDE 660 KERKQTKFKT HNGLIEDPNS FEKERAMINP WTQGEKEVFM EMLATFGKDF TKISSFLNHK 720 TTADCIEFYY KNHKSESFRE VKKRLNLKKQ WQRLPTSSYL GTSGKKWNRE VNAASLDMLG 780 AASVVAAHSN GNVMSQQRYA GHGAHHGLKV SCGSYGSLDK VRCVEIPGHE RETVAADVLA 840 GICGALEAMS SCVTSAVDPV EKMNYTAKER PLTPEVTQNF DEDDTCSDEG CGELDSGDWT 900 DEEKSMFIRA LSMYGKDFAM ISRCVGTRSR EQCKIFFSKA RKCLGLDVIY QGTGNGGMPM 960 NDTNGGRSDT DDAYAAEMDS AICSTQSCSK MDTDVSQSVA NISSEGFVHA ASTPLQAETD 1020 KSSEQDVVGG INLEEDEGKV DKQASVLHDN KLASEVGNPQ AMQDADAALR CNASVQHEAV 1080 VSVDAEMKME GRSPIVSPVE PFLMVCMEVE SKSHVDDVVE QKDTGGSADV SKKEVDVSLL 1140 VPETGSRNRQ QSVDLGATNS GTICSVSDSE ADANALHPGS KDDVCPRSTF APIYHHQIQL 1200 DLLPCLQNKP QGFSLKQENP HSVPLNSLLP DPSSACFEGP RLVASQATSN FEEQGNKRHQ 1260 NPVARELYQV DQPLHMMRNP SLNQVDQPLH ILRGYPLQVL NPVEKEADPL IGENAVFMES 1320 HPKRNGVSQS NQFFTSEMYG DHCNGSNLSH LTPGVLFPPR NEAQPEAQLK HCSQNSCSEP 1380 EEQAHPTGDV KLFGKIICHP SSSQKSNSSS HDCNSKPSSP KMNRSSNLKS SNGGRAGALF 1440 ASRPGSSGHG GLGELPLRSY GFWDGNRIQA GFSSLPDSAV MLAKYQGSLA GMSFYSAKES 1500 VPSRNRILTD YQQSYMQHLS SDEKRLQSFC ELQKRNGIET VSGFQQQGRV ARLGSNMVGG 1560 GILGSGSGGG GGSGGGGVSD PVAALKMHYA ARAKVLSGEL ESWRGDIGGR

Sequence ? help Back to Top

Protein Sequence Length: 1610 aa Download sequence Send to blast

MPFVSGVFDA SGTGQYRQGG GYHQLYPENP GAHGCTPSRS DRFWLEDEGF RPSSGRYGGG  60
GRSSSGGSRE SRGSFRRSPY WDSGDFSRQQ HHDPPVTAQR SVAVPISPAS QPPLKDQNDK  120
TGGAVDDGSG TGHRFDRDHS LGAMSWKPLK WSRAGSLSST KTGRSESEET GLEVLVPTGK  180
ETPIRSPVTS PVPSDEGASK KKPRLGWGQG LAKYEKQKVE GSLDVSGTAA KGALNETSPK  240
VVGLAGCPSP ATPGSVTCSS SPAGIEEKPC SKVVNGDNDT SHYGVSPEEF SNKLGHMEGN  300
PINMLTTLLA DLWQPDDAFA GDCTFSRQTA MNKLLLLKED ISKELEKTEW EIDLFENELK  360
SLNTDPENDP RQSSVTSPAN IAPELCIASS NVASKDSNPS KDHEFTSSAV TLVENDALPT  420
IALNEHDAEL KGVDVDSLQA VLSRFNNSAS SRKGVCDHET EKLAECSKIV ENDRFKVPEI  480
QHFVLSDDVE RTATVCDLGD GSRGEAGSSN DNGNSEASLH GKTDCNLITL IMASNRDAAK  540
KASQGAPPFV EGGSAIAFYK KTSYKVKWTF AFHMFIANEL MVVIACERSE NISAQCLPYF  600
WTLSCHRVYL CGLEAGNLTA GNLTLVPTTE IVEFTSKLLS DSQIKLYRNN LKMPSLILDE  660
KERKQTKFKT HNGLIEDPNS FEKERAMINP WTQGEKEVFM EMLATFGKDF TKISSFLNHK  720
TTADCIEFYY KNHKSESFRE VKKRLNLKKQ WQRLPTSSYL GTSGKKWNRE VNAASLDMLG  780
AASVVAAHSN GNVMSQQRYA GHGAHHGLKV SCGSYGSLDK VRCVEIPGHE RETVAADVLA  840
GICGALEAMS SCVTSAVDPV EKMNYTAKER PLTPEVTQNF DEDDTCSDEG CGELDSGDWT  900
DEEKSMFIRA LSMYGKDFAM ISRCVGTRSR EQCKIFFSKA RKCLGLDVIY QGTGNGGMPM  960
NDTNGGRSDT DDAYAAEMDS AICSTQSCSK MDTDVSQSVA NISSEGFVHA ASTPLQAETD  1020
KSSEQDVVGG INLEEDEGKV DKQASVLHDN KLASEVGNPQ AMQDADAALR CNASVQHEAV  1080
VSVDAEMKME GRSPIVSPVE PFLMVCMEVE SKSHVDDVVE QKDTGGSADV SKKEVDVSLL  1140
VPETGSRNRQ QSVDLGATNS GTICSVSDSE ADANALHPGS KDDVCPRSTF APIYHHQIQL  1200
DLLPCLQNKP QGFSLKQENP HSVPLNSLLP DPSSACFEGP RLVASQATSN FEEQGNKRHQ  1260
NPVARELYQV DQPLHMMRNP SLNQVDQPLH ILRGYPLQVL NPVEKEADPL IGENAVFMES  1320
HPKRNGVSQS NQFFTSEMYG DHCNGSNLSH LTPGVLFPPR NEAQPEAQLK HCSQNSCSEP  1380
EEQAHPTGDV KLFGKIICHP SSSQKSNSSS HDCNSKPSSP KMNRSSNLKS SNGGRAGALF  1440
ASRPGSSGHG GLGELPLRSY GFWDGNRIQA GFSSLPDSAV MLAKYQGSLA GMSFYSAKES  1500
VPSRNRILTD YQQSYMQHLS SDEKRLQSFC ELQKRNGIET VSGFQQQGRV ARLGSNMVGG  1560
GILGSGSGGG GGSGGGGVSD PVAALKMHYA ARAKVLSGEL ESWRGDIGGR

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_008789086.1	0.0	uncharacterized protein LOC103706673 isoform X1
TrEMBL	A0A2H3XUT4	0.0	A0A2H3XUT4_PHODC; uncharacterized protein LOC103706673 isoform X1
STRING	XP_008789086.1	0.0	(Phoenix dactylifera)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Monocots	OGMP6299	35	49

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G52250.1	5e-85	MYB family protein