PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | PDK_30s686362g001 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Arecales; Arecaceae; Coryphoideae; Phoeniceae; Phoenix
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Family | NF-YB | ||||||||
Protein Properties | Length: 191aa MW: 21524.2 Da PI: 5.1729 | ||||||||
Description | NF-YB family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | NF-YB | 176.2 | 3.3e-55 | 26 | 121 | 2 | 97 |
NF-YB 2 reqdrflPianvsrimkkvlPanakiskdaketvqecvsefisfvtseasdkcqrekrktingddllwalatlGfedyveplkvylkkyrel 93 +eqdr+lPianv+rimk++lP nakisk+aket+qecvsefisfvt+easdkc++ekrkt+ngdd++wal+tlGf+dy+ep++ yl+kyre+ PDK_30s686362g001 26 KEQDRLLPIANVGRIMKQILPPNAKISKEAKETMQECVSEFISFVTGEASDKCHKEKRKTVNGDDICWALSTLGFDDYAEPMRRYLQKYREM 117 89****************************************************************************************** PP NF-YB 94 egek 97 eg++ PDK_30s686362g001 118 EGDR 121 **97 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Gene3D | G3DSA:1.10.20.10 | 4.5E-53 | 21 | 130 | IPR009072 | Histone-fold |
SuperFamily | SSF47113 | 1.12E-39 | 28 | 126 | IPR009072 | Histone-fold |
Pfam | PF00808 | 8.8E-28 | 31 | 95 | IPR003958 | Transcription factor CBF/NF-Y/archaeal histone domain |
PRINTS | PR00615 | 3.1E-20 | 59 | 77 | No hit | No description |
PROSITE pattern | PS00685 | 0 | 62 | 78 | IPR003956 | Transcription factor, NFYB/HAP3, conserved site |
PRINTS | PR00615 | 3.1E-20 | 78 | 96 | No hit | No description |
PRINTS | PR00615 | 3.1E-20 | 97 | 115 | No hit | No description |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0043565 | Molecular Function | sequence-specific DNA binding | ||||
GO:0046982 | Molecular Function | protein heterodimerization activity |
Sequence ? help Back to Top |
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Protein Sequence Length: 191 aa Download sequence Send to blast |
MGSSADLEGR QNNCCTDQGG EEGGIKEQDR LLPIANVGRI MKQILPPNAK ISKEAKETMQ 60 ECVSEFISFV TGEASDKCHK EKRKTVNGDD ICWALSTLGF DDYAEPMRRY LQKYREMEGD 120 RAASGSHGSR ANSLDSRDEA RDCFIVWTKD TTIIKEFIGL TSEGIYRTSE AFEMDFSARL 180 YKHILPFKTL T |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
4g91_B | 5e-44 | 25 | 116 | 1 | 92 | Transcription factor HapC (Eurofung) |
4g92_B | 5e-44 | 25 | 116 | 1 | 92 | Transcription factor HapC (Eurofung) |
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Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Component of the NF-Y/HAP transcription factor complex. The NF-Y complex stimulates the transcription of various genes by recognizing and binding to a CCAAT motif in promoters. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_008789950.1 | 1e-102 | nuclear transcription factor Y subunit B-1 | ||||
Swissprot | O82248 | 3e-57 | NFYB5_ARATH; Nuclear transcription factor Y subunit B-5 | ||||
TrEMBL | A0A2H3XXC4 | 1e-100 | A0A2H3XXC4_PHODC; nuclear transcription factor Y subunit B-1 | ||||
STRING | XP_008789950.1 | 1e-101 | (Phoenix dactylifera) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP2917 | 38 | 87 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT2G47810.1 | 1e-59 | nuclear factor Y, subunit B5 |
Publications ? help Back to Top | |||
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