PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID PDK_30s683401g004
Organism
Phoenix dactylifera
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Arecales; Arecaceae; Coryphoideae; Phoeniceae; Phoenix
Family NAC
Protein Properties Length: 280aa    MW: 31455.4 Da    PI: 6.6733
Description NAC family protein
Gene Model
Gene Model ID Type Source Coding Sequence
PDK_30s683401g004genomePDKView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1NAM167.25.6e-52101381129
                NAM   1 lppGfrFhPtdeelvveyLkkkvegkkleleevikevdiykvePwdLpkkvkaeekewyfFskrdkkyatgkrknratksgyWkatgkdkev 92 
                        lppGfrF P+de+lv++yL+kkv++++++   ++ ev+++++ePw+Lp+ +k + +ewyfFs rd+kyatg+r+nratksgyWkatg+d++v
  PDK_30s683401g004  10 LPPGFRFYPSDEDLVCHYLHKKVANERVSG-GTMVEVNLHTCEPWELPEVAKLSANEWYFFSFRDRKYATGSRTNRATKSGYWKATGRDRTV 100
                        79*************************999.88***************88888999************************************ PP

                NAM  93 lsk.kgelvglkktLvfykgrapkgektdWvmheyrle 129
                        ++   ++ vg++ktLvfy+grap+g kt+Wvmhe+rle
  PDK_30s683401g004 101 YDPtARAIVGMRKTLVFYRGRAPNGIKTSWVMHEFRLE 138
                        **966777***************************985 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF1019417.59E-617156IPR003441NAC domain
PROSITE profilePS5100558.16210156IPR003441NAC domain
PfamPF023652.2E-2711137IPR003441NAC domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 280 aa     Download sequence    Send to blast
MDLRDIESTL PPGFRFYPSD EDLVCHYLHK KVANERVSGG TMVEVNLHTC EPWELPEVAK  60
LSANEWYFFS FRDRKYATGS RTNRATKSGY WKATGRDRTV YDPTARAIVG MRKTLVFYRG  120
RAPNGIKTSW VMHEFRLENP PPSPKEDWVL CRVFQKKKGD SVNYSMENDQ DNSIGCSSSH  180
LGSSPLNGHA MPYGCYEQMI PHQEGSSPNT FLNLAALHYN LHGLPQEADS AAMNGMGSRG  240
GQDDFGLLLD VGIEDHDLVD GGMANMGGMK FPRGKDQLFF
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
3ulx_A4e-49515710169Stress-induced transcription factor NAC1
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtBinds to the promoter regions of genes involved in chlorophyll catabolic processes, such as NYC1, SGR1, SGR2 and PAO. {ECO:0000269|PubMed:27021284}.
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: Repressed by the microRNA miR164. {ECO:0000269|PubMed:15294871, ECO:0000269|PubMed:17098808}.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_008789571.11e-171NAC domain-containing protein 100
SwissprotQ9FLJ22e-63NC100_ARATH; NAC domain-containing protein 100
TrEMBLA0A2H3XVY11e-169A0A2H3XVY1_PHODC; NAC domain-containing protein 100
STRINGXP_008789571.11e-170(Phoenix dactylifera)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP69738166
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G28530.11e-82NAC domain containing protein 74
Publications ? help Back to Top
  1. Duarte JM, et al.
    Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis.
    Mol. Biol. Evol., 2006. 23(2): p. 469-78
    [PMID:16280546]