PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID PDK_30s682841g002
Organism
Phoenix dactylifera
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Arecales; Arecaceae; Coryphoideae; Phoeniceae; Phoenix
Family HD-ZIP
Protein Properties Length: 302aa    MW: 33840.2 Da    PI: 8.8103
Description HD-ZIP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
PDK_30s682841g002genomePDKView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Homeobox61.31.5e-19130184256
                        T--SS--HHHHHHHHHHHHHSSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHHHH CS
           Homeobox   2 rkRttftkeqleeLeelFeknrypsaeereeLAkklgLterqVkvWFqNrRakek 56 
                        rk+ +++keq  +Lee+F++++++s +++  LAk+l+L  rqV vWFqNrRa+ k
  PDK_30s682841g002 130 RKKLRLSKEQSAVLEECFKEHNTLSPKQKIALAKQLNLRPRQVEVWFQNRRARTK 184
                        788899***********************************************98 PP
2HD-ZIP_I/II121.44.4e-39130219191
        HD-ZIP_I/II   1 ekkrrlskeqvklLEesFeeeekLeperKvelareLglqprqvavWFqnrRARtktkqlEkdyeaLkraydalkeenerLekeveeLreel 91 
                        +kk+rlskeq+++LEe+F+e+++L+p++K +la++L+l+prqv+vWFqnrRARtk+kq E+d+e+Lkr++++l++en+rL+ke +eLr +l
  PDK_30s682841g002 130 RKKLRLSKEQSAVLEECFKEHNTLSPKQKIALAKQLNLRPRQVEVWFQNRRARTKLKQNEVDCEYLKRWCERLTQENRRLQKEAAELR-AL 219
                        69*************************************************************************************9.55 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF046181.1E-192101IPR006712HD-ZIP protein, N-terminal
SuperFamilySSF466891.55E-19113187IPR009057Homeodomain-like
Gene3DG3DSA:1.10.10.604.7E-19116180IPR009057Homeodomain-like
PROSITE profilePS5007117.378126186IPR001356Homeobox domain
SMARTSM003895.1E-18128190IPR001356Homeobox domain
PfamPF000466.8E-17130184IPR001356Homeobox domain
CDDcd000864.17E-16130187No hitNo description
PROSITE patternPS000270161184IPR017970Homeobox, conserved site
SMARTSM003407.7E-19186229IPR003106Leucine zipper, homeobox-associated
PfamPF021834.7E-8186220IPR003106Leucine zipper, homeobox-associated
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0010582Biological Processfloral meristem determinacy
GO:0048467Biological Processgynoecium development
GO:0080127Biological Processfruit septum development
GO:0005634Cellular Componentnucleus
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
GO:0043621Molecular Functionprotein self-association
Sequence ? help Back to Top
Protein Sequence    Length: 302 aa     Download sequence    Send to blast
MMQEKVDLRL SLSLHPSQNP FPLPSSTYSH SPFPLCQKPQ WINNLLHSSV EEAQPMLKGI  60
DVNRKPGAES VLEEEEGEEE EEASSPGSTL SSVSGKRSER DPFSSGVVVH GLERTSSRGV  120
SDEEDGEGSR KKLRLSKEQS AVLEECFKEH NTLSPKQKIA LAKQLNLRPR QVEVWFQNRR  180
ARTKLKQNEV DCEYLKRWCE RLTQENRRLQ KEAAELRALK LLSPMQLPVK MMPPTTLTIC  240
PSCQRVISPS KSSNSSSTTA TATSSSPPAN HQHHRLFLAA PYSNPNPWAL APFGSAYLNR  300
SS
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1128134SRKKLRL
2178186RRARTKLKQ
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor. {ECO:0000250}.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00050PBMTransfer from AT4G17460Download
Motif logo
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_017700362.10.0homeobox-leucine zipper protein HAT4-like
SwissprotP466008e-79HAT1_ARATH; Homeobox-leucine zipper protein HAT1
TrEMBLA0A2H3ZV750.0A0A2H3ZV75_PHODC; homeobox-leucine zipper protein HAT4-like
STRINGXP_008801806.11e-179(Phoenix dactylifera)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP25873889
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G17460.14e-59Homeobox-leucine zipper protein 4 (HB-4) / HD-ZIP protein
Publications ? help Back to Top
  1. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]
  2. Zou LJ, et al.
    Role of Transcription Factor HAT1 in Modulating Arabidopsis thaliana Response to Cucumber mosaic virus.
    Plant Cell Physiol., 2016. 57(9): p. 1879-89
    [PMID:27328697]
  3. Lozano-Sotomayor P, et al.
    Altered expression of the bZIP transcription factor DRINK ME affects growth and reproductive development in Arabidopsis thaliana.
    Plant J., 2016. 88(3): p. 437-451
    [PMID:27402171]
  4. Tan W, et al.
    Transcription factor HAT1 is a substrate of SnRK2.3 kinase and negatively regulates ABA synthesis and signaling in Arabidopsis responding to drought.
    PLoS Genet., 2018. 14(4): p. e1007336
    [PMID:29659577]