PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
|
Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
---|---|---|---|---|---|---|---|---|---|
TF ID | PDK_30s680911g001 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Arecales; Arecaceae; Coryphoideae; Phoeniceae; Phoenix
|
||||||||
Family | GATA | ||||||||
Protein Properties | Length: 288aa MW: 32572.8 Da PI: 9.986 | ||||||||
Description | GATA family protein | ||||||||
Gene Model |
|
Signature Domain? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | GATA | 62.3 | 5.6e-20 | 163 | 197 | 1 | 35 |
GATA 1 CsnCgttkTplWRrgpdgnktLCnaCGlyyrkkgl 35 CsnC ttkTplWR+gp+g+k+LCnaCG+++rk ++ PDK_30s680911g001 163 CSNCSTTKTPLWRSGPQGPKSLCNACGIRQRKARQ 197 ********************************876 PP |
Protein Features ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SMART | SM00401 | 1.6E-20 | 157 | 209 | IPR000679 | Zinc finger, GATA-type |
SuperFamily | SSF57716 | 9.98E-14 | 157 | 196 | No hit | No description |
Gene3D | G3DSA:3.30.50.10 | 1.7E-16 | 161 | 196 | IPR013088 | Zinc finger, NHR/GATA-type |
PROSITE profile | PS50114 | 13.059 | 161 | 193 | IPR000679 | Zinc finger, GATA-type |
CDD | cd00202 | 4.36E-15 | 162 | 194 | No hit | No description |
Pfam | PF00320 | 1.2E-17 | 163 | 197 | IPR000679 | Zinc finger, GATA-type |
PROSITE pattern | PS00344 | 0 | 163 | 188 | IPR000679 | Zinc finger, GATA-type |
Gene Ontology ? help Back to Top | ||||||
---|---|---|---|---|---|---|
GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0007623 | Biological Process | circadian rhythm | ||||
GO:0009416 | Biological Process | response to light stimulus | ||||
GO:0009735 | Biological Process | response to cytokinin | ||||
GO:0009740 | Biological Process | gibberellic acid mediated signaling pathway | ||||
GO:0009910 | Biological Process | negative regulation of flower development | ||||
GO:0010187 | Biological Process | negative regulation of seed germination | ||||
GO:0010380 | Biological Process | regulation of chlorophyll biosynthetic process | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding | ||||
GO:0008270 | Molecular Function | zinc ion binding | ||||
GO:0043565 | Molecular Function | sequence-specific DNA binding | ||||
GO:0044212 | Molecular Function | transcription regulatory region DNA binding |
Sequence ? help Back to Top |
---|
Protein Sequence Length: 288 aa Download sequence Send to blast |
MIPSNLNQSS LPLKKRNQDQ SHLPTSTPTT NTSYPRPVFL ETSIEDQGAN CREPHGHQQQ 60 QQEKPNEFVL IDGSSDFLQS FSTNNDDKND RRDQYVCDGY HHHEDGHGSV KWMPSKMRWM 120 RKMLAWEQTV TSKPRSSMKN LEEKIQQNRD SIRNFPSGTI RVCSNCSTTK TPLWRSGPQG 180 PKSLCNACGI RQRKARQAAM VVAAAGSGLV AMNTPSKVQK EKRTDRESTI SNKKRCKINT 240 TRTARKKLQI DDIMMSLSDD SAFHRVFPQD EKEAAILLMA LSCGLIHG |
Annotation -- Protein ? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
Source | Hit ID | E-value | Description | ||||
Refseq | XP_008797761.2 | 0.0 | putative GATA transcription factor 22 | ||||
TrEMBL | A0A2H3YF04 | 0.0 | A0A2H3YF04_PHODC; putative GATA transcription factor 22 | ||||
STRING | XP_008797761.1 | 1e-126 | (Phoenix dactylifera) |
Orthologous Group ? help Back to Top | |||
---|---|---|---|
Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP1893 | 38 | 99 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Hit ID | E-value | Description | ||||
AT4G26150.1 | 4e-27 | cytokinin-responsive gata factor 1 |