PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID PDK_30s680691g001
Organism
Phoenix dactylifera
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Arecales; Arecaceae; Coryphoideae; Phoeniceae; Phoenix
Family C3H
Protein Properties Length: 110aa    MW: 12168.3 Da    PI: 4.0054
Description C3H family protein
Gene Model
Gene Model ID Type Source Coding Sequence
PDK_30s680691g001genomePDKView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-CCCH38.32.2e-125075126
                       --S---SGGGGTS--TTTTT-SS-SS CS
            zf-CCCH  1 yktelCrffartGtCkyGdrCkFaHg 26
                       ++++ C +++rtG+C yG++C+++H+
  PDK_30s680691g001 50 PGEPDCIYYLRTGYCGYGSNCRYNHP 75
                       5789*********************8 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5010313.8264977IPR000571Zinc finger, CCCH-type
SMARTSM003561.5E-54976IPR000571Zinc finger, CCCH-type
PfamPF006424.1E-105175IPR000571Zinc finger, CCCH-type
SuperFamilySSF902291.31E-65475IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.103.3E-55574IPR000571Zinc finger, CCCH-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 110 aa     Download sequence    Send to blast
MPDTRPVQSN AVANSSNACP DNLGEAMWQL KIEDCRGGAD AIPNLYPDRP GEPDCIYYLR  60
TGYCGYGSNC RYNHPNYIGQ GTLYTGELPE RDGQPDCQIQ YGENDCDVLP
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_008799408.17e-66zinc finger CCCH domain-containing protein 66-like isoform X1
RefseqXP_008799415.11e-66zinc finger CCCH domain-containing protein 66-like isoform X2
TrEMBLA0A2H3YIS12e-65A0A2H3YIS1_PHODC; zinc finger CCCH domain-containing protein 66-like isoform X2
TrEMBLA0A2H3YIW82e-64A0A2H3YIW8_PHODC; zinc finger CCCH domain-containing protein 66-like isoform X1
STRINGXP_008799408.13e-65(Phoenix dactylifera)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP2576345
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G04990.22e-24C3H family protein