PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

PDK_30s680151g004

Organism

Phoenix dactylifera

Taxonomic ID

42345

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Arecales; Arecaceae; Coryphoideae; Phoeniceae; Phoenix

Family

bHLH

Protein Properties

Length: 486aa MW: 51598.4 Da PI: 8.7989

Description

bHLH family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
PDK_30s680151g004	genome	PDK	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	HLH	27.6	5.1e-09	336	384	3	55
HHHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS HLH 3 rahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 +h+ +Er RR++i +++ L+el+P + sk Ka +L + ++Y++sLq PDK_30s680151g004 336 NSHSLAERVRREKISERMKFLQELVPGC----SKVTGKAVMLDEIINYVQSLQ 384 58***********************9....556***************9 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
CDD	cd00083	3.63E-11	331	388	No hit	No description
SuperFamily	SSF47459	7.59E-17	331	402	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
PROSITE profile	PS50888	15.459	333	383	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
Gene3D	G3DSA:4.10.280.10	2.1E-16	334	400	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
Pfam	PF00010	3.7E-6	336	384	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
SMART	SM00353	9.9E-10	339	389	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0046983	Molecular Function	protein dimerization activity

Sequence ? help Back to Top
Protein Sequence Length: 486 aa Download sequence Send to blast
MGINEKDKFG WEKAGDHPNY HSSGMPADRQ FGNPSISLVS AHPMVSSPSP SVSMVESFPP 60 SLWNPSAHSQ NSGFCGNSVQ SSMVASNSMP TGKPIPGPSK LDMGWNPSDS SSQGSRVFLQ 120 TGPGALSPTL SHFPTDSAFI EHVARFSSFN GGNLNGMVSP FSTAESLSSY SNTRKGALGA 180 QIQKSKMSPT EARMAASLPI DHGSSSRSPM KEQRDKGSLH GAGVSGNESG EPEFSGGGQE 240 EAPNLASPAG DSSSKGLAAN KRKRSGQDIE PDRVQGGASQ PSVETTEDNV DTKQKPGQNS 300 STMATVKPNG KQAKDSSDAP KEDCIHVRAR RGQATNSHSL AERVRREKIS ERMKFLQELV 360 PGCSKVTGKA VMLDEIINYV QSLQRQVEFL SMKLAAVNPR LDFNIEGLLS KDLFHSRGGP 420 SSSIGFSRDT VHPQLHPSQQ GLVQAGMSGI VNHSDALRTA MNAQLTSING YKEPMPQKLV 480 TDLGGP

Sequence ? help Back to Top

Protein Sequence Length: 486 aa Download sequence Send to blast

MGINEKDKFG WEKAGDHPNY HSSGMPADRQ FGNPSISLVS AHPMVSSPSP SVSMVESFPP  60
SLWNPSAHSQ NSGFCGNSVQ SSMVASNSMP TGKPIPGPSK LDMGWNPSDS SSQGSRVFLQ  120
TGPGALSPTL SHFPTDSAFI EHVARFSSFN GGNLNGMVSP FSTAESLSSY SNTRKGALGA  180
QIQKSKMSPT EARMAASLPI DHGSSSRSPM KEQRDKGSLH GAGVSGNESG EPEFSGGGQE  240
EAPNLASPAG DSSSKGLAAN KRKRSGQDIE PDRVQGGASQ PSVETTEDNV DTKQKPGQNS  300
STMATVKPNG KQAKDSSDAP KEDCIHVRAR RGQATNSHSL AERVRREKIS ERMKFLQELV  360
PGCSKVTGKA VMLDEIINYV QSLQRQVEFL SMKLAAVNPR LDFNIEGLLS KDLFHSRGGP  420
SSSIGFSRDT VHPQLHPSQQ GLVQAGMSGI VNHSDALRTA MNAQLTSING YKEPMPQKLV  480
TDLGGP

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_008807016.1	0.0	transcription factor bHLH49-like isoform X1
Refseq	XP_008807017.1	0.0	transcription factor bHLH49-like isoform X1
TrEMBL	A0A2H3Z1B5	0.0	A0A2H3Z1B5_PHODC; transcription factor bHLH49-like isoform X1
STRING	XP_008807015.1	0.0	(Phoenix dactylifera)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Monocots	OGMP2909	37	85

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G68920.3	4e-80	bHLH family protein