PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | PDK_30s679881g007 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Arecales; Arecaceae; Coryphoideae; Phoeniceae; Phoenix
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Family | MYB | ||||||||
Protein Properties | Length: 355aa MW: 38890.3 Da PI: 4.7378 | ||||||||
Description | MYB family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | Myb_DNA-binding | 54.3 | 3e-17 | 16 | 63 | 1 | 48 |
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 +g+WT+eEd +l +++++G g+W++ +++ g+ R++k+c++rw +yl PDK_30s679881g007 16 KGSWTPEEDMRLMAYIQKYGHGNWRALPKKAGLLRCGKSCRLRWINYL 63 799*****************************99************97 PP | |||||||
2 | Myb_DNA-binding | 51.6 | 2.2e-16 | 69 | 114 | 1 | 48 |
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 rg++T eE+e +++++ +lG++ W++Ia++++ gRt++++k+ w+++l PDK_30s679881g007 69 RGNFTREEEETIIKLHGLLGNK-WSKIASCLP-GRTDNEIKNVWNTHL 114 89********************.*********.************986 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Gene3D | G3DSA:1.10.10.60 | 5.0E-25 | 7 | 66 | IPR009057 | Homeodomain-like |
PROSITE profile | PS51294 | 15.972 | 11 | 63 | IPR017930 | Myb domain |
SuperFamily | SSF46689 | 4.49E-31 | 13 | 110 | IPR009057 | Homeodomain-like |
SMART | SM00717 | 1.7E-13 | 15 | 65 | IPR001005 | SANT/Myb domain |
Pfam | PF00249 | 9.8E-16 | 16 | 63 | IPR001005 | SANT/Myb domain |
CDD | cd00167 | 1.19E-10 | 18 | 63 | No hit | No description |
PROSITE profile | PS51294 | 24.794 | 64 | 118 | IPR017930 | Myb domain |
Gene3D | G3DSA:1.10.10.60 | 3.8E-26 | 67 | 118 | IPR009057 | Homeodomain-like |
SMART | SM00717 | 1.3E-14 | 68 | 116 | IPR001005 | SANT/Myb domain |
Pfam | PF00249 | 1.6E-14 | 69 | 114 | IPR001005 | SANT/Myb domain |
CDD | cd00167 | 1.78E-10 | 71 | 114 | No hit | No description |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0009751 | Biological Process | response to salicylic acid | ||||
GO:0009753 | Biological Process | response to jasmonic acid | ||||
GO:0045893 | Biological Process | positive regulation of transcription, DNA-templated | ||||
GO:2000652 | Biological Process | regulation of secondary cell wall biogenesis | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 355 aa Download sequence Send to blast |
MGRGRAPCCE KVGLNKGSWT PEEDMRLMAY IQKYGHGNWR ALPKKAGLLR CGKSCRLRWI 60 NYLRPDIKRG NFTREEEETI IKLHGLLGNK WSKIASCLPG RTDNEIKNVW NTHLKKRLLH 120 RGQSQQTDKL GETPSSSSST PTHSSSDQGE GKSDSEHTNP SVDSTNPSED KIEIPTEPGM 180 DLWLMLEDAL PSSPQKTDTE ERNMWEPPLE PNSFKVSPCS SPSHSFATNC NTGGGGGGGG 240 GGVQALDDAP IEPELWSMIE DGDAGLFSPG MEGAMEEPGV RGNPTGLHEE SSREEGSIIW 300 LEYLEKELGL GGAMDDNQEC LMGPWPEMEG DPVSSYFQKG PSSPSPLDLH DLKVS |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
1h8a_C | 5e-27 | 14 | 118 | 25 | 128 | MYB TRANSFORMING PROTEIN |
Search in ModeBase |
Binding Motif ? help Back to Top | |||
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Motif ID | Method | Source | Motif file |
MP00249 | DAP | Transfer from AT1G79180 | Download |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_008776690.1 | 0.0 | myb-related protein Zm1-like | ||||
TrEMBL | A0A2H3X0Z8 | 0.0 | A0A2H3X0Z8_PHODC; myb-related protein Zm1-like | ||||
STRING | XP_008776690.1 | 0.0 | (Phoenix dactylifera) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP2154 | 37 | 98 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G79180.1 | 2e-67 | myb domain protein 63 |