PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

PDK_30s679881g001

Organism

Phoenix dactylifera

Taxonomic ID

42345

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Arecales; Arecaceae; Coryphoideae; Phoeniceae; Phoenix

Family

HSF

Protein Properties

Length: 468aa MW: 51606.6 Da PI: 4.3474

Description

HSF family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
PDK_30s679881g001	genome	PDK	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	HSF_DNA-bind	99.1	4.2e-31	1	86	9	103
HHCTGGGTTTSEESSSSSEEEES-HHHHHHHTHHHHSTT--HHHHHHHHHHTTEEE---SSBTTTTXTTSEEEEESXXXXXXXXXXXXXXXX CS HSF_DNA-bind 9 iledeelkeliswsengnsfvvldeeefakkvLpkyFkhsnfaSFvRQLnmYgFkkvkdeekkskskekiweFkhksFkkgkkellekikrk 100 +++d++++ ++sw +nsfvv+++ efa+++LpkyFkhsnf+SFvRQLn+YgF+kv+ ++ weF+++ F +g+k+ll++i+r+ PDK_30s679881g001 1 MVDDPATDAIVSWGPANNSFVVWNTPEFARDLLPKYFKHSNFSSFVRQLNTYGFRKVDPDR---------WEFANEGFLRGRKDLLKTINRR 83 899*********999*************************************999.........******************** PP XXX CS HSF_DNA-bind 101 kse 103 k + PDK_30s679881g001 84 KPS 86 975 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Gene3D	G3DSA:1.10.10.10	3.3E-33	1	83	IPR011991	Winged helix-turn-helix DNA-binding domain
SMART	SM00415	2.0E-48	1	83	IPR000232	Heat shock factor (HSF)-type, DNA-binding
Pfam	PF00447	1.4E-27	1	83	IPR000232	Heat shock factor (HSF)-type, DNA-binding
SuperFamily	SSF46785	3.81E-30	1	83	IPR011991	Winged helix-turn-helix DNA-binding domain
PRINTS	PR00056	7.7E-10	32	44	IPR000232	Heat shock factor (HSF)-type, DNA-binding
PROSITE pattern	PS00434	0	33	57	IPR000232	Heat shock factor (HSF)-type, DNA-binding
PRINTS	PR00056	7.7E-10	45	57	IPR000232	Heat shock factor (HSF)-type, DNA-binding

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0009408	Biological Process	response to heat
GO:0005634	Cellular Component	nucleus
GO:0003700	Molecular Function	transcription factor activity, sequence-specific DNA binding
GO:0043565	Molecular Function	sequence-specific DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 468 aa Download sequence Send to blast
MVDDPATDAI VSWGPANNSF VVWNTPEFAR DLLPKYFKHS NFSSFVRQLN TYGFRKVDPD 60 RWEFANEGFL RGRKDLLKTI NRRKPSHMHG QTQQPQPQNA SVAACVEVGK FGLEEEIERL 120 KRDKNVLMQE LVRLRQQQQS TSHQLQTLGK RLKGMERRQQ QMMSFLAKAM QSPGFLAQLV 180 QQTDNNRLIA RGNKKRRMPK QEGSLSGDSA SPDGQIIKYQ PLTNEAAKTM LRQILKAGSS 240 QPRLESFSNS DNLSLENFPS SSGAFDCSSS SQNSGVTLAE VPPNSGVPYV PSSSGFSAVG 300 LSSAVSEIQS SAGVTDMVSN DELPGMDVLS AVPEAIAATD ESIPELEGVM PDDSVAILSE 360 NFAMPDPETV YIDPITAGMD GAAVPIETEQ VSADANIDIL DDDPELSGII DSFWEEFFSS 420 PVTEETEEAE LSILEAMEDR PRPENGWDNS QNMEHLTEQM VLLSPDPK

Sequence ? help Back to Top

Protein Sequence Length: 468 aa Download sequence Send to blast

MVDDPATDAI VSWGPANNSF VVWNTPEFAR DLLPKYFKHS NFSSFVRQLN TYGFRKVDPD  60
RWEFANEGFL RGRKDLLKTI NRRKPSHMHG QTQQPQPQNA SVAACVEVGK FGLEEEIERL  120
KRDKNVLMQE LVRLRQQQQS TSHQLQTLGK RLKGMERRQQ QMMSFLAKAM QSPGFLAQLV  180
QQTDNNRLIA RGNKKRRMPK QEGSLSGDSA SPDGQIIKYQ PLTNEAAKTM LRQILKAGSS  240
QPRLESFSNS DNLSLENFPS SSGAFDCSSS SQNSGVTLAE VPPNSGVPYV PSSSGFSAVG  300
LSSAVSEIQS SAGVTDMVSN DELPGMDVLS AVPEAIAATD ESIPELEGVM PDDSVAILSE  360
NFAMPDPETV YIDPITAGMD GAAVPIETEQ VSADANIDIL DDDPELSGII DSFWEEFFSS  420
PVTEETEEAE LSILEAMEDR PRPENGWDNS QNMEHLTEQM VLLSPDPK

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
2ldu_A	4e-23	1	86	27	123	Heat shock factor protein 1
5d5u_B	5e-23	1	83	36	129	Heat shock factor protein 1
5d5v_B	5e-23	1	83	36	129	Heat shock factor protein 1
5d5v_D	5e-23	1	83	36	129	Heat shock factor protein 1
5hdg_A	3e-23	1	83	17	110	Heat shock factor protein 1
5hdn_A	3e-23	1	83	17	110	Heat shock factor protein 1
5hdn_B	3e-23	1	83	17	110	Heat shock factor protein 1
5hdn_C	3e-23	1	83	17	110	Heat shock factor protein 1
5hdn_D	3e-23	1	83	17	110	Heat shock factor protein 1
Search in ModeBase

Functional Description ? help Back to Top
Source	Description
UniProt	Transcriptional regulator that specifically binds DNA of heat shock promoter elements (HSE). {ECO:0000250}.

Binding Motif ? help Back to Top
Motif ID	Method	Source	Motif file
MP00514	DAP	Transfer from AT5G16820	Download

Regulation -- Description ? help Back to Top
Source	Description
UniProt	INDUCTION: Not induced by heat stress. {ECO:0000269\|PubMed:18064488}.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_008776696.1	0.0	heat stress transcription factor A-1-like
Swissprot	Q84T61	0.0	HSFA1_ORYSJ; Heat stress transcription factor A-1
TrEMBL	A0A2H3X109	0.0	A0A2H3X109_PHODC; heat stress transcription factor A-1-like
STRING	XP_008776696.1	0.0	(Phoenix dactylifera)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Monocots	OGMP5097	31	51

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G16820.2	1e-114	heat shock factor 3

Publications ? help Back to Top
Chauhan H,Khurana N,Agarwal P,Khurana P Heat shock factors in rice (Oryza sativa L.): genome-wide expression analysis during reproductive development and abiotic stress. Mol. Genet. Genomics, 2011. 286(2): p. 171-87 [PMID:21792744]