PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Previous version: v3.0 v4.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID PDK_30s679841g001
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Arecales; Arecaceae; Coryphoideae; Phoeniceae; Phoenix
Family NAC
Protein Properties Length: 334aa    MW: 38871.7 Da    PI: 6.949
Description NAC family protein
Gene Model
Gene Model ID Type Source Coding Sequence
PDK_30s679841g001genomePDKView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1NAM177.14.9e-5571361129
                NAM   1 lppGfrFhPtdeelvveyLkkkvegkkleleevikevdiykvePwdLpk..kvkaeek.ewyfFskrdkkyatgkrknratksgyWkatgkd 89 
                        +ppGfrFhP+deelv++yL+kkv++kk++l +vik+vd+yk+ePwdL++  ++ aee+ ewy Fs++dkky+tg+r+nrat++g+Wkatg+d
  PDK_30s679841g001   7 VPPGFRFHPSDEELVDYYLRKKVASKKIDL-DVIKDVDLYKIEPWDLQEkcRIGAEEQlEWYLFSHKDKKYPTGTRTNRATAAGFWKATGRD 97 
                        69****************************.9***************952455555557********************************* PP

                NAM  90 kevlskkgelvglkktLvfykgrapkgektdWvmheyrle 129
                        k+++s k++l+g++ktLvfykgrap+g+k+dW+mheyrle
  PDK_30s679841g001  98 KPIYS-KHNLIGMRKTLVFYKGRAPNGQKSDWIMHEYRLE 136
                        *****.899*****************************85 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF1019411.7E-605156IPR003441NAC domain
PROSITE profilePS5100558.9917156IPR003441NAC domain
PfamPF023652.2E-278135IPR003441NAC domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 334 aa     Download sequence    Send to blast
MDAFSRVPPG FRFHPSDEEL VDYYLRKKVA SKKIDLDVIK DVDLYKIEPW DLQEKCRIGA  60
EEQLEWYLFS HKDKKYPTGT RTNRATAAGF WKATGRDKPI YSKHNLIGMR KTLVFYKGRA  120
PNGQKSDWIM HEYRLETHEN GPPQEEGWVV CRVFKKRVPT VRKPSELESP CWYDEQSSVM  180
QDCLDSPNSI SMQPNMAYHQ HLQSYKRETK MHCHLPYEPF YQLPQLESRK LPNYINHGNS  240
LQSFTSSEDK TVQPSHQLQM VTFYNTSGDI EQAVEQVTDW RVLDRFVASQ LSHDVTKGPE  300
YSDTADILQV SGKQEVAVEY ASTSTSSCQI DPWK
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
3ulx_A7e-51715715169Stress-induced transcription factor NAC1
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtTranscription activator that binds to the secondary wall NAC binding element (SNBE), 5'-(T/A)NN(C/T)(T/C/G)TNNNNNNNA(A/C)GN(A/C/T)(A/T)-3', in the promoter of target genes (By similarity). Involved in xylem formation by promoting the expression of secondary wall-associated transcription factors and of genes involved in secondary wall biosynthesis and programmed cell death, genes driven by the secondary wall NAC binding element (SNBE). Triggers thickening of secondary walls (PubMed:16103214, PubMed:25148240). {ECO:0000250|UniProtKB:Q9LVA1, ECO:0000269|PubMed:16103214, ECO:0000269|PubMed:25148240}.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_008809032.10.0NAC domain-containing protein 7-like
SwissprotQ9FWX21e-127NAC7_ARATH; NAC domain-containing protein 7
TrEMBLA0A2H3Z6390.0A0A2H3Z639_PHODC; NAC domain-containing protein 7-like
STRINGXP_008809032.10.0(Phoenix dactylifera)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP23703892
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G12260.11e-107NAC 007
Publications ? help Back to Top
  1. Duarte JM, et al.
    Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis.
    Mol. Biol. Evol., 2006. 23(2): p. 469-78
    [PMID:16280546]
  2. Heyndrickx KS,Vandepoele K
    Systematic identification of functional plant modules through the integration of complementary data sources.
    Plant Physiol., 2012. 159(3): p. 884-901
    [PMID:22589469]