PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

PDK_30s679841g001

Organism

Phoenix dactylifera

Taxonomic ID

42345

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Arecales; Arecaceae; Coryphoideae; Phoeniceae; Phoenix

Family

NAC

Protein Properties

Length: 334aa MW: 38871.7 Da PI: 6.949

Description

NAC family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
PDK_30s679841g001	genome	PDK	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	NAM	177.1	4.9e-55	7	136	1	129
NAM 1 lppGfrFhPtdeelvveyLkkkvegkkleleevikevdiykvePwdLpk..kvkaeek.ewyfFskrdkkyatgkrknratksgyWkatgkd 89 +ppGfrFhP+deelv++yL+kkv++kk++l +vik+vd+yk+ePwdL++ ++ aee+ ewy Fs++dkky+tg+r+nrat++g+Wkatg+d PDK_30s679841g001 7 VPPGFRFHPSDEELVDYYLRKKVASKKIDL-DVIKDVDLYKIEPWDLQEkcRIGAEEQlEWYLFSHKDKKYPTGTRTNRATAAGFWKATGRD 97 69**************************.9***********952455555557***************************** PP NAM 90 kevlskkgelvglkktLvfykgrapkgektdWvmheyrle 129 k+++s k++l+g++ktLvfykgrap+g+k+dW+mheyrle PDK_30s679841g001 98 KPIYS-KHNLIGMRKTLVFYKGRAPNGQKSDWIMHEYRLE 136 *.899***************************85 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SuperFamily	SSF101941	1.7E-60	5	156	IPR003441	NAC domain
PROSITE profile	PS51005	58.991	7	156	IPR003441	NAC domain
Pfam	PF02365	2.2E-27	8	135	IPR003441	NAC domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 334 aa Download sequence Send to blast
MDAFSRVPPG FRFHPSDEEL VDYYLRKKVA SKKIDLDVIK DVDLYKIEPW DLQEKCRIGA 60 EEQLEWYLFS HKDKKYPTGT RTNRATAAGF WKATGRDKPI YSKHNLIGMR KTLVFYKGRA 120 PNGQKSDWIM HEYRLETHEN GPPQEEGWVV CRVFKKRVPT VRKPSELESP CWYDEQSSVM 180 QDCLDSPNSI SMQPNMAYHQ HLQSYKRETK MHCHLPYEPF YQLPQLESRK LPNYINHGNS 240 LQSFTSSEDK TVQPSHQLQM VTFYNTSGDI EQAVEQVTDW RVLDRFVASQ LSHDVTKGPE 300 YSDTADILQV SGKQEVAVEY ASTSTSSCQI DPWK

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
3ulx_A	7e-51	7	157	15	169	Stress-induced transcription factor NAC1
Search in ModeBase

Functional Description ? help Back to Top
Source	Description
UniProt	Transcription activator that binds to the secondary wall NAC binding element (SNBE), 5'-(T/A)NN(C/T)(T/C/G)TNNNNNNNA(A/C)GN(A/C/T)(A/T)-3', in the promoter of target genes (By similarity). Involved in xylem formation by promoting the expression of secondary wall-associated transcription factors and of genes involved in secondary wall biosynthesis and programmed cell death, genes driven by the secondary wall NAC binding element (SNBE). Triggers thickening of secondary walls (PubMed:16103214, PubMed:25148240). {ECO:0000250\|UniProtKB:Q9LVA1, ECO:0000269\|PubMed:16103214, ECO:0000269\|PubMed:25148240}.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_008809032.1	0.0	NAC domain-containing protein 7-like
Swissprot	Q9FWX2	1e-127	NAC7_ARATH; NAC domain-containing protein 7
TrEMBL	A0A2H3Z639	0.0	A0A2H3Z639_PHODC; NAC domain-containing protein 7-like
STRING	XP_008809032.1	0.0	(Phoenix dactylifera)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Monocots	OGMP2370	38	92

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G12260.1	1e-107	NAC 007

Publications ? help Back to Top
Duarte JM, et al. Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis. Mol. Biol. Evol., 2006. 23(2): p. 469-78 [PMID:16280546] Heyndrickx KS,Vandepoele K Systematic identification of functional plant modules through the integration of complementary data sources. Plant Physiol., 2012. 159(3): p. 884-901 [PMID:22589469]