PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | PDK_30s679071g007 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Arecales; Arecaceae; Coryphoideae; Phoeniceae; Phoenix
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Family | MIKC_MADS | ||||||||
Protein Properties | Length: 184aa MW: 21024.5 Da PI: 8.6942 | ||||||||
Description | MIKC_MADS family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | SRF-TF | 81.4 | 6e-26 | 10 | 58 | 2 | 50 |
---SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSEEEEEE CS SRF-TF 2 rienksnrqvtfskRrngilKKAeELSvLCdaevaviifsstgklyeys 50 rien +rqvtf+kRr+g+lKKA ELSvLCda++ +iifs++gklye + PDK_30s679071g007 10 RIENPVQRQVTFCKRRAGLLKKARELSVLCDADIGIIIFSNHGKLYELA 58 8*********************************************965 PP | |||||||
2 | K-box | 13.2 | 3.9e-06 | 126 | 157 | 69 | 100 |
K-box 69 KnellleqieelqkkekelqeenkaLrkklee 100 K+++++++i+ l++ke l+ +nk L++k+ e PDK_30s679071g007 126 KMQIMFQEIQLLKNKEGILKAANKILQEKITE 157 99***************************976 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF55455 | 4.19E-28 | 1 | 74 | IPR002100 | Transcription factor, MADS-box |
SMART | SM00432 | 2.1E-35 | 1 | 60 | IPR002100 | Transcription factor, MADS-box |
PROSITE profile | PS50066 | 29.52 | 1 | 61 | IPR002100 | Transcription factor, MADS-box |
CDD | cd00265 | 4.26E-38 | 3 | 71 | No hit | No description |
PROSITE pattern | PS00350 | 0 | 3 | 57 | IPR002100 | Transcription factor, MADS-box |
PRINTS | PR00404 | 4.9E-27 | 3 | 23 | IPR002100 | Transcription factor, MADS-box |
Pfam | PF00319 | 2.9E-24 | 10 | 56 | IPR002100 | Transcription factor, MADS-box |
PRINTS | PR00404 | 4.9E-27 | 23 | 38 | IPR002100 | Transcription factor, MADS-box |
PRINTS | PR00404 | 4.9E-27 | 38 | 59 | IPR002100 | Transcription factor, MADS-box |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0003677 | Molecular Function | DNA binding | ||||
GO:0046983 | Molecular Function | protein dimerization activity |
Sequence ? help Back to Top |
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Protein Sequence Length: 184 aa Download sequence Send to blast |
MPRGKVQMRR IENPVQRQVT FCKRRAGLLK KARELSVLCD ADIGIIIFSN HGKLYELATN 60 GDMQSLIERY KSIGAEAQLE GGEVNQPQVS ELEKLEISML KQEIDLLQKG ISNFRWLGNE 120 PHMAWKMQIM FQEIQLLKNK EGILKAANKI LQEKITEKNG LFDIGTVTEG IPYPLTIQDN 180 IFQI |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
5f28_A | 8e-16 | 1 | 90 | 1 | 78 | MEF2C |
5f28_B | 8e-16 | 1 | 90 | 1 | 78 | MEF2C |
5f28_C | 8e-16 | 1 | 90 | 1 | 78 | MEF2C |
5f28_D | 8e-16 | 1 | 90 | 1 | 78 | MEF2C |
Search in ModeBase |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Probable transcription factor. | |||||
UniProt | Probable transcription factor. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_010912876.1 | 1e-102 | MADS-box transcription factor 26-like | ||||
Swissprot | A2YQK9 | 2e-62 | MAD26_ORYSI; MADS-box transcription factor 26 | ||||
Swissprot | Q0J8G8 | 2e-62 | MAD26_ORYSJ; MADS-box transcription factor 26 | ||||
TrEMBL | A0A199VRK0 | 3e-74 | A0A199VRK0_ANACO; MADS-box transcription factor 33 | ||||
STRING | XP_008782100.1 | 1e-110 | (Phoenix dactylifera) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP1491 | 36 | 112 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G71692.1 | 5e-54 | AGAMOUS-like 12 |
Publications ? help Back to Top | |||
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