PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

PDK_30s679071g003

Organism

Phoenix dactylifera

Taxonomic ID

42345

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Arecales; Arecaceae; Coryphoideae; Phoeniceae; Phoenix

Family

M-type_MADS

Protein Properties

Length: 129aa MW: 14407.9 Da PI: 10.7356

Description

M-type_MADS family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
PDK_30s679071g003	genome	PDK	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	SRF-TF	100.4	6.9e-32	70	120	1	51
S---SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSEEEEEE- CS SRF-TF 1 krienksnrqvtfskRrngilKKAeELSvLCdaevaviifsstgklyeyss 51 krien++nrqvtf+kRrng+lKKA+ELSvLCdae+a+i+fss+g+lyeys+ PDK_30s679071g003 70 KRIENTTNRQVTFCKRRNGLLKKAYELSVLCDAEIALIVFSSRGRLYEYSN 120 79***********************************************95 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS50066	33.838	62	122	IPR002100	Transcription factor, MADS-box
SMART	SM00432	2.0E-42	62	121	IPR002100	Transcription factor, MADS-box
CDD	cd00265	1.57E-40	63	121	No hit	No description
SuperFamily	SSF55455	9.03E-30	63	122	IPR002100	Transcription factor, MADS-box
PRINTS	PR00404	2.1E-33	64	84	IPR002100	Transcription factor, MADS-box
PROSITE pattern	PS00350	0	64	118	IPR002100	Transcription factor, MADS-box
Pfam	PF00319	6.6E-27	71	118	IPR002100	Transcription factor, MADS-box
PRINTS	PR00404	2.1E-33	84	99	IPR002100	Transcription factor, MADS-box
PRINTS	PR00404	2.1E-33	99	120	IPR002100	Transcription factor, MADS-box

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0003677	Molecular Function	DNA binding
GO:0046983	Molecular Function	protein dimerization activity

Sequence ? help Back to Top
Protein Sequence Length: 129 aa Download sequence Send to blast
MGGIGELRVG VIKRRTPAIW SDGSGHAVAF PLPLPPLGIH GSGVPLKDRK KPETKVKSKE 60 VMGRGKIEIK RIENTTNRQV TFCKRRNGLL KKAYELSVLC DAEIALIVFS SRGRLYEYSN 120 NRCVYVDVR

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
1tqe_P	2e-21	62	120	1	59	Myocyte-specific enhancer factor 2B
1tqe_Q	2e-21	62	120	1	59	Myocyte-specific enhancer factor 2B
1tqe_R	2e-21	62	120	1	59	Myocyte-specific enhancer factor 2B
1tqe_S	2e-21	62	120	1	59	Myocyte-specific enhancer factor 2B
6c9l_A	2e-21	62	120	1	59	Myocyte-specific enhancer factor 2B
6c9l_B	2e-21	62	120	1	59	Myocyte-specific enhancer factor 2B
6c9l_C	2e-21	62	120	1	59	Myocyte-specific enhancer factor 2B
6c9l_D	2e-21	62	120	1	59	Myocyte-specific enhancer factor 2B
6c9l_E	2e-21	62	120	1	59	Myocyte-specific enhancer factor 2B
6c9l_F	2e-21	62	120	1	59	Myocyte-specific enhancer factor 2B
Search in ModeBase

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_008786400.1	1e-50	MADS-box transcription factor 3 isoform X2
TrEMBL	A0A2H3XND7	3e-49	A0A2H3XND7_PHODC; MADS-box transcription factor 3 isoform X2
STRING	XP_008786399.1	1e-47	(Phoenix dactylifera)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Monocots	OGMP129	38	398

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT4G09960.2	8e-38	MIKC_MADS family protein