PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID PDK_30s678121g001
Organism
Phoenix dactylifera
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Arecales; Arecaceae; Coryphoideae; Phoeniceae; Phoenix
Family MYB
Protein Properties Length: 333aa    MW: 37391.3 Da    PI: 7.868
Description MYB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
PDK_30s678121g001genomePDKView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding50.83.8e-16120165147
                        TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS
    Myb_DNA-binding   1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47 
                        rg W + Ed +l ++v+ +G+ +W++Ia+++  gR++k+c++rw++ 
  PDK_30s678121g001 120 RGHWRPAEDSKLRELVAIYGPQNWNLIAEKLE-GRSGKSCRLRWFNQ 165
                        899*****************************.***********996 PP
2Myb_DNA-binding54.52.7e-17172215146
                        TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHH CS
    Myb_DNA-binding   1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqk 46 
                        r ++++eE+e+l  a++++G++ W+ Iar ++ gRt++ +k++w+ 
  PDK_30s678121g001 172 RRAFSEEEEEKLMAAHRLYGNK-WAMIARLFP-GRTDNAIKNHWHV 215
                        678*******************.*********.***********96 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5129417.785115166IPR017930Myb domain
SMARTSM007171.5E-14119168IPR001005SANT/Myb domain
SuperFamilySSF466897.11E-28119213IPR009057Homeodomain-like
PfamPF002491.3E-15120165IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.608.1E-26121173IPR009057Homeodomain-like
CDDcd001673.59E-12123164No hitNo description
PROSITE profilePS5129426.821167221IPR017930Myb domain
SMARTSM007171.9E-14171219IPR001005SANT/Myb domain
PfamPF002493.9E-14172214IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.606.2E-21174220IPR009057Homeodomain-like
CDDcd001679.38E-11174214No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 333 aa     Download sequence    Send to blast
MALQQRGGSE GMETSCGFRS YSSSPSSSIG VFADLGSLSI IPTTSVGSYH CTKNSEKASW  60
TFKFMQRSEV GRRCFDGSDG SGEEEPNAIR EERPDGEKTN ESAQGGKETV DCGQSKLCNR  120
GHWRPAEDSK LRELVAIYGP QNWNLIAEKL EGRSGKSCRL RWFNQLDPRI NRRAFSEEEE  180
EKLMAAHRLY GNKWAMIARL FPGRTDNAIK NHWHVIMARK YREQSNAYRR RKLSHAVQRG  240
LEEGKEGHDK ANFHSSSSWD WPRDDSICFN HHPPFMVAVQ QSSHASHYSA STAMAASRVS  300
AIESSSSEEN RESSHFEATI SQPFIDFLGV GAT
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1a5j_A3e-311202207107B-MYB
1h88_C2e-3012022058158MYB PROTO-ONCOGENE PROTEIN
1h89_C2e-3012022058158MYB PROTO-ONCOGENE PROTEIN
Search in ModeBase
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankKM6625923e-89KM662592.1 Ananas bracteatus clone 46432b microsatellite sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_008802623.11e-174transcription factor CSA-like
TrEMBLA0A2H3YRL41e-172A0A2H3YRL4_PHODC; transcription factor CSA-like
STRINGXP_008802623.11e-173(Phoenix dactylifera)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP29438260
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G69560.11e-75myb domain protein 105