PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

PDK_30s677941g002

Organism

Phoenix dactylifera

Taxonomic ID

42345

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Arecales; Arecaceae; Coryphoideae; Phoeniceae; Phoenix

Family

NF-YC

Protein Properties

Length: 294aa MW: 31885.1 Da PI: 4.9496

Description

NF-YC family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
PDK_30s677941g002	genome	PDK	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	NF-YC	60.3	4.2e-19	6	86	18	98
NF-YC 18 nhelPlarikkilkadedvkmisaeaPvllskacelfileltlrswlhaeenkrrtlkksdiaaavtrtdifdflvdivpr 98 ++++P +rikki++adedv +i+ +Pvl+ska elf+ +l r++ + + +t+ ++++v + ++fdfl div + PDK_30s677941g002 6 ETRFPASRIKKIMQADEDVGKIALAVPVLVSKALELFLQDLCDRTYDITLQRGMKTMSALHLKQCVHSFNVFDFLKDIVSK 86 5789**************************************************************************986 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SuperFamily	SSF47113	1.9E-20	3	89	IPR009072	Histone-fold
Gene3D	G3DSA:1.10.20.10	3.1E-25	3	72	IPR009072	Histone-fold
Pfam	PF00808	4.4E-18	8	71	IPR003958	Transcription factor CBF/NF-Y/archaeal histone domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0046982	Molecular Function	protein heterodimerization activity

Sequence ? help Back to Top
Protein Sequence Length: 294 aa Download sequence Send to blast
MRKKLETRFP ASRIKKIMQA DEDVGKIALA VPVLVSKALE LFLQDLCDRT YDITLQRGMK 60 TMSALHLKQC VHSFNVFDFL KDIVSKVPDM GTSDAGGDDR SAKRRKAADD DNDNEELKRS 120 RAHEGPVGHS GGGRGRGRGR GRGRGARGAR GADKDGAHYD KYEDDPGSPP QHSDRPPHVK 180 SEMMDDGVSA RESKETTVSC SNTGSAIRNF DLNLDLDENG DTPTAAVTAT GTTKATAAAA 240 AAAASSETDQ GMKHGEYPGW LLADVDTMAI DPIQFALSDQ RLDEEEEDYD NEDS

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
1jfi_A	6e-22	2	71	5	74	Transcription Regulator NC2 alpha chain
Search in ModeBase

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	133	143	RGRGRGRGRGR
2	135	144	RGRGRGRGRG

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_008786874.1	0.0	dr1-associated corepressor-like isoform X1
TrEMBL	A0A2H3XPI2	0.0	A0A2H3XPI2_PHODC; dr1-associated corepressor-like isoform X1
STRING	XP_008786874.1	0.0	(Phoenix dactylifera)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Monocots	OGMP2172	36	79

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G19490.1	8e-52	NF-YC family protein