PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
|
Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
---|---|---|---|---|---|---|---|---|---|
TF ID | PDK_30s677311g007 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Arecales; Arecaceae; Coryphoideae; Phoeniceae; Phoenix
|
||||||||
Family | Trihelix | ||||||||
Protein Properties | Length: 365aa MW: 41903.1 Da PI: 6.2652 | ||||||||
Description | Trihelix family protein | ||||||||
Gene Model |
|
Signature Domain? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | trihelix | 82.6 | 5.3e-26 | 51 | 132 | 2 | 86 |
trihelix 2 WtkqevlaLiearremeerlrrgklkkplWeevskkmrergferspkqCkekwenlnkrykkikegekkrtsessstcpyfdqle 86 W ++e++ Li +rrem+ ++ +k++k+lWe++s+km+++gf rsp++C++kw+nl k++kk+k ++k+ s+++ +++y+++l+ PDK_30s677311g007 51 WVQEETRSLISLRREMDGLFNMSKSNKHLWEQISAKMKDKGFDRSPTMCTDKWRNLLKEFKKVKYHAKG--SGAV-KMSYYKELD 132 ********************************************************************8..4665.799***998 PP |
Protein Features ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS50090 | 8.838 | 43 | 107 | IPR017877 | Myb-like domain |
Gene3D | G3DSA:1.10.10.60 | 1.3E-5 | 44 | 109 | IPR009057 | Homeodomain-like |
SMART | SM00717 | 3.9E-5 | 47 | 109 | IPR001005 | SANT/Myb domain |
CDD | cd12203 | 3.19E-29 | 49 | 114 | No hit | No description |
Pfam | PF13837 | 1.5E-20 | 50 | 134 | No hit | No description |
Gene Ontology ? help Back to Top | ||||||
---|---|---|---|---|---|---|
GO Term | GO Category | GO Description | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding | ||||
GO:0042802 | Molecular Function | identical protein binding | ||||
GO:0043565 | Molecular Function | sequence-specific DNA binding |
Sequence ? help Back to Top |
---|
Protein Sequence Length: 365 aa Download sequence Send to blast |
MYLSEKPQSV DYYKEDSRDM MIQVPQQQMI LAESSGEDHE MKAPKKRAET WVQEETRSLI 60 SLRREMDGLF NMSKSNKHLW EQISAKMKDK GFDRSPTMCT DKWRNLLKEF KKVKYHAKGS 120 GAVKMSYYKE LDEMLKERNK NPAYKSPTAS KVDSYLQFSD KGLEDANISF GPVEGTGRST 180 LNVDRRLDHE RHPLAITAAD EVAASGVSPW NWRDTPANGG DNHTSYGGRV ILVKWGDYTR 240 KIGIDGSAEA IKDAIKSAFG IRTRRAFWLE DEDEVVRSLD RDMPLGTYIL HLDDGITIKI 300 CIYDESDHIP VRTEEKTFYT QEDFRDFLNR NGWTGLRELS GFRSVDTMDD LHPGAVYQGL 360 RLLSD |
3D Structure ? help Back to Top | ||||||
---|---|---|---|---|---|---|
PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
2jmw_A | 1e-45 | 45 | 130 | 1 | 86 | DNA binding protein GT-1 |
Search in ModeBase |
Functional Description ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Description | |||||
UniProt | Probable transcription factor that binds specifically to the core DNA sequence 5'-GGTTAA-3'. May act as a molecular switch in response to light signals. {ECO:0000269|PubMed:10437822, ECO:0000269|PubMed:15044016, ECO:0000269|PubMed:7866025}. |
Binding Motif ? help Back to Top | |||
---|---|---|---|
Motif ID | Method | Source | Motif file |
MP00640 | PBM | Transfer from MDP0000164819 | Download |
Annotation -- Protein ? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
Source | Hit ID | E-value | Description | ||||
Refseq | XP_026661118.1 | 0.0 | trihelix transcription factor GT-1-like | ||||
Swissprot | Q9FX53 | 0.0 | TGT1_ARATH; Trihelix transcription factor GT-1 | ||||
TrEMBL | A0A3Q0I2M7 | 0.0 | A0A3Q0I2M7_PHODC; trihelix transcription factor GT-1-like | ||||
STRING | XP_008792161.1 | 0.0 | (Phoenix dactylifera) |
Orthologous Group ? help Back to Top | |||
---|---|---|---|
Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP5631 | 37 | 52 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Hit ID | E-value | Description | ||||
AT1G13450.1 | 0.0 | Trihelix family protein |
Publications ? help Back to Top | |||
---|---|---|---|
|