PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | PDK_30s674801g004 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Arecales; Arecaceae; Coryphoideae; Phoeniceae; Phoenix
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Family | G2-like | ||||||||
Protein Properties | Length: 247aa MW: 27211 Da PI: 8.8077 | ||||||||
Description | G2-like family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | G2-like | 99.5 | 2.3e-31 | 30 | 83 | 1 | 55 |
G2-like 1 kprlrWtpeLHerFveaveqLGGsekAtPktilelmkvkgLtlehvkSHLQkYRl 55 kprlrWt +LHerFv+av+qLGG+ekAtPkti+++m+vkgLtl h+kSHLQkYRl PDK_30s674801g004 30 KPRLRWT-DLHERFVDAVTQLGGPEKATPKTIMRTMGVKGLTLFHLKSHLQKYRL 83 79****9.8*********************************************8 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Gene3D | G3DSA:1.10.10.60 | 1.7E-29 | 27 | 84 | IPR009057 | Homeodomain-like |
SuperFamily | SSF46689 | 1.22E-13 | 30 | 85 | IPR009057 | Homeodomain-like |
TIGRFAMs | TIGR01557 | 5.2E-22 | 30 | 84 | IPR006447 | Myb domain, plants |
Pfam | PF14379 | 2.1E-22 | 124 | 169 | IPR025756 | MYB-CC type transcription factor, LHEQLE-containing domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 247 aa Download sequence Send to blast |
MFSGVLHRPE ASISQEEAHG PRLVLTADPK PRLRWTDLHE RFVDAVTQLG GPEKATPKTI 60 MRTMGVKGLT LFHLKSHLQK YRLGKQSGKE MTDQSKDASY PLENPSSSGL SPRLPTPDVN 120 EGQEVKEALR AQMEVQRRLH EQVEVQKHVQ IRMEAYHKYI DSLLEKACKI ASEQIASSGF 180 NGTGHDLPDL ATGVMCSPSD PLSPSVFHQL SLGAISLHSP GGKTSPSSAI EGQSFYPKAP 240 ELKRKLC |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
6j4r_A | 5e-18 | 30 | 85 | 1 | 57 | Protein PHOSPHATE STARVATION RESPONSE 1 |
6j4r_B | 5e-18 | 30 | 85 | 1 | 57 | Protein PHOSPHATE STARVATION RESPONSE 1 |
6j4r_C | 5e-18 | 30 | 85 | 1 | 57 | Protein PHOSPHATE STARVATION RESPONSE 1 |
6j4r_D | 5e-18 | 30 | 85 | 1 | 57 | Protein PHOSPHATE STARVATION RESPONSE 1 |
Search in ModeBase |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Transcriptional activator (PubMed:26586833). Acts redundantly with PHR1 as a key component of the central regulatory system controlling transcriptional responses to Pi starvation (PubMed:26586833). Binds in a sequence-specific manner to phosphate starvation-regulated promoters (PubMed:26586833). {ECO:0000269|PubMed:26586833}. |
Regulation -- Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | INDUCTION: Up-regulated in roots by low Pi. {ECO:0000269|PubMed:26586833}. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_008794716.1 | 0.0 | protein PHR1-LIKE 2-like | ||||
Swissprot | Q94A57 | 1e-71 | PHL2_ARATH; Protein PHR1-LIKE 2 | ||||
TrEMBL | A0A2H3Y853 | 1e-180 | A0A2H3Y853_PHODC; protein PHR1-LIKE 2-like | ||||
STRING | XP_008794716.1 | 0.0 | (Phoenix dactylifera) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP3427 | 38 | 73 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT3G24120.1 | 6e-74 | G2-like family protein |
Publications ? help Back to Top | |||
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