PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | PDK_30s674441g001 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Arecales; Arecaceae; Coryphoideae; Phoeniceae; Phoenix
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Family | FAR1 | ||||||||
Protein Properties | Length: 573aa MW: 63568.5 Da PI: 9.3799 | ||||||||
Description | FAR1 family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | FAR1 | 90.7 | 2e-28 | 36 | 125 | 2 | 88 |
FAR1 2 fYneYAkevGFsvrkskskkskrngeitkrtfvCskegkreeekkk...tekerrtraetrtgCkaklkvkkekdgkwevtkleleHnHe 88 fY +YA++vGF++r+s+ ++s+r+++i++r+ vCskeg+re+ ++ e+++r+ra+tr+gCka+++vkk +kw vtk+++eHnH PDK_30s674441g001 36 FYAAYAERVGFRIRISRYTRSRRDNSIISRRIVCSKEGFRESCANEglsGERRQRQRAVTRVGCKAMIMVKKLGPEKWIVTKFVKEHNHG 125 9*****************************************9999998899999**********************************5 PP | |||||||
2 | FAR1 | 89.3 | 5.5e-28 | 173 | 265 | 2 | 90 |
FAR1 2 fYneYAkevGFsvrkskskkskrngeitkrtfvCskegkreeekkk....tekerrtraetrtgCkaklkvkkekdgkwevtkleleHnHel 89 fY +YA+++GF+ r+sk +s+r+++i++r+ vCskeg+re + k+ + k +r+r+ tr+gCka++ vk+ ++gkw+vtk+e+eHnH+l PDK_30s674441g001 173 FYIAYARHMGFRARISKYCRSRRDNSIISRQIVCSKEGFREVRVKNeitdEGKIKRPRVITRIGCKAMIIVKRANSGKWVVTKFEKEHNHDL 264 9******************************************9999998889999**********************************99 PP FAR1 90 a 90 PDK_30s674441g001 265 K 265 5 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Pfam | PF03101 | 3.0E-25 | 36 | 125 | IPR004330 | FAR1 DNA binding domain |
Pfam | PF03101 | 1.2E-25 | 173 | 265 | IPR004330 | FAR1 DNA binding domain |
Sequence ? help Back to Top |
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Protein Sequence Length: 573 aa Download sequence Send to blast |
MMQNPDKGEI IASGGDTDAE PYEGMEFESE EAARTFYAAY AERVGFRIRI SRYTRSRRDN 60 SIISRRIVCS KEGFRESCAN EGLSGERRQR QRAVTRVGCK AMIMVKKLGP EKWIVTKFVK 120 EHNHGPVPPR RVEVRTVRRN DDFLVQSYTS DGGAVQEPFE GMEFESEDAA KTFYIAYARH 180 MGFRARISKY CRSRRDNSII SRQIVCSKEG FREVRVKNEI TDEGKIKRPR VITRIGCKAM 240 IIVKRANSGK WVVTKFEKEH NHDLKMPNLE SHSNSGEVIN LQGAIMKANG MVMDESSART 300 QGTSQESLCV LYNQLCYEAI RYAQEGAATE DSYNVAMSAL KEAAEKVAAA KKAAVNVGQQ 360 GLHIGGAKQA FLVVHPAQTK ALKDLQCLNE VKQVPLILNI ANSQLLHNPS DVVHAAHATQ 420 VLNITNAVSV LKQSLPSTPP MEGLIGNGLQ GSDLPEEMKM SVQTVDKDVE LDSTIQKRRC 480 QCRQWIKMWS LIPPSRNLRG YNSVKKLGSP YQFSINNLDS TNAAKADFTP RSGNNLTSPG 540 SSEAQPVAIP AVPVTLYVPV MGSLPTSCSG CCQ |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_026656633.1 | 0.0 | uncharacterized protein LOC103696283 | ||||
Refseq | XP_026656634.1 | 0.0 | uncharacterized protein LOC103696283 | ||||
TrEMBL | A0A2H3ZHL7 | 0.0 | A0A2H3ZHL7_PHODC; uncharacterized protein LOC103696283 | ||||
STRING | XP_008776072.1 | 0.0 | (Phoenix dactylifera) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP9031 | 33 | 45 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT3G07500.1 | 2e-34 | FAR1 family protein |