PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

PDK_30s672751g002

Organism

Phoenix dactylifera

Taxonomic ID

42345

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Arecales; Arecaceae; Coryphoideae; Phoeniceae; Phoenix

Family

C3H

Protein Properties

Length: 1071aa MW: 114480 Da PI: 6.4037

Description

C3H family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
PDK_30s672751g002	genome	PDK	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-CCCH	19.2	2.1e-06	1052	1071	6	26
-SGGGGTS--TTTTT-SS-SS CS zf-CCCH 6 CrffartGtCkyGdrCkFaHg 26 Cr f+++G+Ck G++C++ H+ PDK_30s672751g002 1052 CR-FHENGHCKKGASCNYLHP 1071 88.9999*************8 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SuperFamily	SSF55277	1.31E-15	161	221	IPR003169	GYF domain
PROSITE profile	PS50829	12.337	168	220	IPR003169	GYF domain
SMART	SM00444	1.1E-10	169	222	IPR003169	GYF domain
Gene3D	G3DSA:3.30.1490.40	1.6E-14	170	221	IPR003169	GYF domain
Pfam	PF02213	2.1E-9	171	212	IPR003169	GYF domain
PROSITE profile	PS50103	13.657	1046	1071	IPR000571	Zinc finger, CCCH-type

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0005515	Molecular Function	protein binding
GO:0046872	Molecular Function	metal ion binding

Sequence ? help Back to Top
Protein Sequence Length: 1071 aa Download sequence Send to blast
MRRLNEVPEI HADPHMDPDY ESAEEEEVDD KKGDKYSRLR ESVSRRKARD LFPPGRGPGS 60 NYNGSGGSKS SSNLNRGSRT EDAQDKLDAY SDGADRTNEL SWNQGKDAQW TKSWGTPNTQ 120 TSATGLEAGI WNNNQLATKP GSTHGVASET SASVPSRLSV PSNVSENDKV WHYQDPAGIV 180 QGPFSMVQLL KWNKFFPPGL RIWLTTEKQE NSILLTDVLK SQNCLPQQEP QHNSYPQPAN 240 FAGPMGNRDD KYGGRRGTNN STWVGMQNGS NWSASQNNAT FSTAGNTLPN AGRWATRSAN 300 LSALEMEAVK GNNAWFGQPS CQKSPRSAAP FSGNPYQQPS YQSGEGQGYA GIWNIGQDHG 360 STWNSERPRG SRASGQGYER QHSSWSPLNQ QSQLTSGEPW KARPTNYSNL PTPTQQPSRT 420 DWTSVQGSLH ASASTASSIQ PMNSGWGTTR VTGFSGAHKL PTENPDGDQN MPNQSNGEGS 480 WSVTSASVPS MSRMADVGGA QILEIVDQFG DPSLSVQQKP TESNAPNIVV NQSSLFLKKE 540 EISSNDATVS GGSAMNKSQS FESDYPSPTP RGDGKEFSGD QPNEADPATK WPQAHDSSAS 600 VSQGSDPDPA SLAFRPLDPQ AHLSRKVDNM QLLSRNSDEG VADKDIISEM QNLSTQKSFS 660 EEQNKQPPLA GMEEKLVDPA SNIKPTAESD VLELTATQRS ETSSASRPVC ELHGRAPASA 720 HKQEPNGSST VPTPPGGELH FSGPDPIKYS NLEGAQDTTA IEWSLPSPTP GSRPSGWDIG 780 ADSSSGNIQN YRLVLLDGFN MLKAFPLNVG SSVELAILSN PGWGTKAKDV PSWGGAPQLN 840 VGTGSAQGSE NRGWATAIQG HANTGSGAPT QGNANANAGW GTLGQVCNNA NTDWRTQVQG 900 NTNANLRWEA PAWGNLTSSS LGAPIQGNSN PNTGWCAPSQ GNSNQFSGWG VPPAGNGIQN 960 LGWGALTQQG NKDAIAGWGT GSNRSWNSPA RDPDSWGAQR RHHGDDYPEG RVLRHGGGRS 1020 SWNRTQSASG GGSSRPPPRG EGPKGQGQRG VCRFHENGHC KKGASCNYLH P

Sequence ? help Back to Top

Protein Sequence Length: 1071 aa Download sequence Send to blast

MRRLNEVPEI HADPHMDPDY ESAEEEEVDD KKGDKYSRLR ESVSRRKARD LFPPGRGPGS  60
NYNGSGGSKS SSNLNRGSRT EDAQDKLDAY SDGADRTNEL SWNQGKDAQW TKSWGTPNTQ  120
TSATGLEAGI WNNNQLATKP GSTHGVASET SASVPSRLSV PSNVSENDKV WHYQDPAGIV  180
QGPFSMVQLL KWNKFFPPGL RIWLTTEKQE NSILLTDVLK SQNCLPQQEP QHNSYPQPAN  240
FAGPMGNRDD KYGGRRGTNN STWVGMQNGS NWSASQNNAT FSTAGNTLPN AGRWATRSAN  300
LSALEMEAVK GNNAWFGQPS CQKSPRSAAP FSGNPYQQPS YQSGEGQGYA GIWNIGQDHG  360
STWNSERPRG SRASGQGYER QHSSWSPLNQ QSQLTSGEPW KARPTNYSNL PTPTQQPSRT  420
DWTSVQGSLH ASASTASSIQ PMNSGWGTTR VTGFSGAHKL PTENPDGDQN MPNQSNGEGS  480
WSVTSASVPS MSRMADVGGA QILEIVDQFG DPSLSVQQKP TESNAPNIVV NQSSLFLKKE  540
EISSNDATVS GGSAMNKSQS FESDYPSPTP RGDGKEFSGD QPNEADPATK WPQAHDSSAS  600
VSQGSDPDPA SLAFRPLDPQ AHLSRKVDNM QLLSRNSDEG VADKDIISEM QNLSTQKSFS  660
EEQNKQPPLA GMEEKLVDPA SNIKPTAESD VLELTATQRS ETSSASRPVC ELHGRAPASA  720
HKQEPNGSST VPTPPGGELH FSGPDPIKYS NLEGAQDTTA IEWSLPSPTP GSRPSGWDIG  780
ADSSSGNIQN YRLVLLDGFN MLKAFPLNVG SSVELAILSN PGWGTKAKDV PSWGGAPQLN  840
VGTGSAQGSE NRGWATAIQG HANTGSGAPT QGNANANAGW GTLGQVCNNA NTDWRTQVQG  900
NTNANLRWEA PAWGNLTSSS LGAPIQGNSN PNTGWCAPSQ GNSNQFSGWG VPPAGNGIQN  960
LGWGALTQQG NKDAIAGWGT GSNRSWNSPA RDPDSWGAQR RHHGDDYPEG RVLRHGGGRS  1020
SWNRTQSASG GGSSRPPPRG EGPKGQGQRG VCRFHENGHC KKGASCNYLH P

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_008791654.1	0.0	zinc finger CCCH domain-containing protein 19-like
TrEMBL	A0A2H3Y0V7	0.0	A0A2H3Y0V7_PHODC; zinc finger CCCH domain-containing protein 19-like
STRING	XP_008791654.1	0.0	(Phoenix dactylifera)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Monocots	OGMP7179	3	8

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G16485.1	4e-16	nucleic acid binding;zinc ion binding;DNA binding