PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID PDK_30s672321g007
Organism
Phoenix dactylifera
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Arecales; Arecaceae; Coryphoideae; Phoeniceae; Phoenix
Family MYB
Protein Properties Length: 303aa    MW: 34127.3 Da    PI: 7.4742
Description MYB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
PDK_30s672321g007genomePDKView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding54.92e-171764148
                       TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS
    Myb_DNA-binding  1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48
                       rg+WT eEd ll+++++ +G g+W++ a++ g++Rt+k+c++rw++yl
  PDK_30s672321g007 17 RGPWTLEEDTLLIHYIACHGEGRWNLLAKCSGLKRTGKSCRLRWLNYL 64
                       89********************************************97 PP
2Myb_DNA-binding51.13.1e-1670113146
                        TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHH CS
    Myb_DNA-binding   1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqk 46 
                        rg+ ++eE+ l+++++ ++G++ W++Ia++++ gRt++++k++w++
  PDK_30s672321g007  70 RGNLSPEEQFLILELHSKWGNR-WSRIAQHLP-GRTDNEIKNYWRT 113
                        7899******************.*********.***********96 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5129416.3981264IPR017930Myb domain
SuperFamilySSF466891.2E-3014111IPR009057Homeodomain-like
SMARTSM007171.6E-141666IPR001005SANT/Myb domain
PfamPF002491.2E-151764IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.601.2E-221871IPR009057Homeodomain-like
CDDcd001674.84E-121964No hitNo description
PROSITE profilePS5129424.80265119IPR017930Myb domain
SMARTSM007178.2E-1569117IPR001005SANT/Myb domain
PfamPF002494.2E-1570113IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.601.9E-2372118IPR009057Homeodomain-like
CDDcd001672.94E-1274113No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0009686Biological Processgibberellin biosynthetic process
GO:0009751Biological Processresponse to salicylic acid
GO:0016036Biological Processcellular response to phosphate starvation
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 303 aa     Download sequence    Send to blast
MSEKRGSNKN EEMELRRGPW TLEEDTLLIH YIACHGEGRW NLLAKCSGLK RTGKSCRLRW  60
LNYLKPDIKR GNLSPEEQFL ILELHSKWGN RWSRIAQHLP GRTDNEIKNY WRTRVQKQAR  120
QLKIDANSAM FRDAIRCSWM PRLLEKMGSS QSMPSLIDSN ATAAAAGMID QTPHDGRPPQ  180
QFSNPAMQYP FENCSSYEPS GSENHSPSTS SGSMTLPQLP YLSSSPANSC NGFTFNPFMS  240
GHCIDHSGYG LDTVDLAPAP SSQLGSSVSD YTMATNNCVD SIGDGLWNMD ELWYSRHNMS  300
YTC
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1a5j_A3e-25141194108B-MYB
Search in ModeBase
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00216DAPTransfer from AT1G68320Download
Motif logo
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_017701316.10.0transcription factor MYB62-like
TrEMBLA0A2H3ZYT50.0A0A2H3ZYT5_PHODC; transcription factor MYB62-like
STRINGXP_008807088.10.0(Phoenix dactylifera)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP19838330
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G68320.12e-83myb domain protein 62