PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID PDK_30s671281g003
Organism
Phoenix dactylifera
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Arecales; Arecaceae; Coryphoideae; Phoeniceae; Phoenix
Family ARF
Protein Properties Length: 587aa    MW: 65043.2 Da    PI: 8.5572
Description ARF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
PDK_30s671281g003genomePDKView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1B373.62.4e-2337137198
                        EEEE-..-HHHHTT-EE--HHH.HTT.....---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SS CS
                 B3   1 ffkvltpsdvlksgrlvlpkkfaeeh.....ggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgr 87 
                        f+k+lt sd++++g +++ +++a+e+     +++++ +++l+ +d++g +W++k+i+r++++r++lt+GW+ Fv +++L +gD +vF   + 
  PDK_30s671281g003  37 FCKILTASDTSTHGGFSVLRRHATEClppldMSQPTPTQELVATDLHGFEWRFKHIFRGQPRRHLLTTGWSTFVASKRLVAGDAFVFL--RA 126
                        99*****************************77777888*************************************************..45 PP

                        SEE..EEEEE- CS
                 B3  88 sefelvvkvfr 98 
                        +++el+v+++r
  PDK_30s671281g003 127 ESGELRVGARR 137
                        9999***9997 PP
2Auxin_resp100.22.8e-33163242183
         Auxin_resp   1 aahaastksvFevvYnPrastseFvvkvekvekalkvkvsvGmRfkmafetedsserrlsGtvvgvsdldpvrWpnSkWrsLk 83 
                        a+ha+st++ F v+Y+Pr   s+++v v+k+++a+k+ ++vGmRfkm+fe+ed++e+r++Gt+vgv d+++ +W +SkWrsLk
  PDK_30s671281g003 163 ASHAISTGTLFMVYYKPRI--SQYIVGVNKYLEAVKHGFTVGMRFKMRFEGEDVPEKRFTGTIVGVGDASS-QWAGSKWRSLK 242
                        789***************8..9**********************************************666.*********96 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF1019366.41E-4022166IPR015300DNA-binding pseudobarrel domain
Gene3DG3DSA:2.40.330.109.2E-3830152IPR015300DNA-binding pseudobarrel domain
CDDcd100173.41E-1836137No hitNo description
SMARTSM010191.5E-2137139IPR003340B3 DNA binding domain
PfamPF023623.8E-2137137IPR003340B3 DNA binding domain
PROSITE profilePS5086311.58937139IPR003340B3 DNA binding domain
PfamPF065071.9E-31163242IPR010525Auxin response factor
PfamPF023096.7E-7451508IPR033389AUX/IAA domain
SuperFamilySSF542773.53E-11470548No hitNo description
PROSITE profilePS5174526.993472553IPR000270PB1 domain
PfamPF023092.2E-5515557IPR033389AUX/IAA domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0009725Biological Processresponse to hormone
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0005515Molecular Functionprotein binding
Sequence ? help Back to Top
Protein Sequence    Length: 587 aa     Download sequence    Send to blast
MEQMKFMLKL LCSQDRIEPT SLDSTLPEPP RPTVQSFCKI LTASDTSTHG GFSVLRRHAT  60
ECLPPLDMSQ PTPTQELVAT DLHGFEWRFK HIFRGQPRRH LLTTGWSTFV ASKRLVAGDA  120
FVFLRAESGE LRVGARRLAK QQSMVPSSVI SSRSMHLGVL ATASHAISTG TLFMVYYKPR  180
ISQYIVGVNK YLEAVKHGFT VGMRFKMRFE GEDVPEKRFT GTIVGVGDAS SQWAGSKWRS  240
LKVRWDEATS IVVPRPDRVS PWEIEPLDAP VPVFNAPQAV FVKNKRPRQS MDTADHLVLE  300
TTQSHDLAAL SSADANSSAT QVVWPCLQKE NTENGVKNGP SSCDPVVLDG RLKDFNSPIK  360
RPPSSPTDVS LQLFQDMNGE TKVASLANGV REWKKPEVGG NGCRLFGIDL MNHSKSTAIA  420
EKAIAAPVVS ISVAPVEESD RQSGLSKALR EQKQGLDSSP KEMQSRQHGS TRSRTKVHMQ  480
GMAVGRAVDL TNLEGYSELT RELEQMFEIK GELRQRNKWE VVFTDDEGDM MLVGDDPWPE  540
FCKMARKIFI YASEEVKKMK PGSKLSAPPS TEAEEADGVC PPRSVSV
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
4ldv_A1e-125826995357Auxin response factor 1
4ldw_A1e-125826995357Auxin response factor 1
4ldw_B1e-125826995357Auxin response factor 1
4ldx_A1e-125826995357Auxin response factor 1
4ldx_B1e-125826995357Auxin response factor 1
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtAuxin response factors (ARFs) are transcriptional factors that bind specifically to the DNA sequence 5'-TGTCTC-3' found in the auxin-responsive promoter elements (AuxREs). Could act as transcriptional activator or repressor. Formation of heterodimers with Aux/IAA proteins may alter their ability to modulate early auxin response genes expression. {ECO:0000269|PubMed:12036261}.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_026666308.10.0auxin response factor 1-like isoform X2
SwissprotQ9XED80.0ARFI_ARATH; Auxin response factor 9
TrEMBLA0A3Q0IH430.0A0A3Q0IH43_PHODC; Auxin response factor
STRINGXP_008808096.10.0(Phoenix dactylifera)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP108236116
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G23980.20.0auxin response factor 9