PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | PDK_30s671251g012 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Arecales; Arecaceae; Coryphoideae; Phoeniceae; Phoenix
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Family | NAC | ||||||||
Protein Properties | Length: 311aa MW: 35550.8 Da PI: 5.4035 | ||||||||
Description | NAC family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | NAM | 173.2 | 7.6e-54 | 8 | 135 | 2 | 128 |
NAM 2 ppGfrFhPtdeelvveyLkkkvegkkleleevikevdiykvePwdLpk...kvkaeekewyfFskrdkkyatgkrknratksgyWkatgkdk 90 ppGfrFhPt+eelv +yL++kv+++k++l evi+++d+y++ePwdL+ ++e++ewyfFs++dkky++g+r+nrat++g+Wkatg+dk PDK_30s671251g012 8 PPGFRFHPTEEELVGYYLARKVSSQKIDL-EVITDIDLYRIEPWDLQDrckLGYEEQNEWYFFSHKDKKYPSGTRTNRATTAGFWKATGRDK 98 9****************************.99**************952432234677********************************** PP NAM 91 evlskkgelvglkktLvfykgrapkgektdWvmheyrl 128 +v+s k +g++ktLvfy+grap+g+ktdW+mheyrl PDK_30s671251g012 99 AVIS-KYGIIGMRKTLVFYEGRAPNGRKTDWIMHEYRL 135 ****.7889***************************98 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF101941 | 4.97E-60 | 5 | 156 | IPR003441 | NAC domain |
PROSITE profile | PS51005 | 58.558 | 7 | 156 | IPR003441 | NAC domain |
Pfam | PF02365 | 2.1E-28 | 8 | 135 | IPR003441 | NAC domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 311 aa Download sequence Send to blast |
MEVESCIPPG FRFHPTEEEL VGYYLARKVS SQKIDLEVIT DIDLYRIEPW DLQDRCKLGY 60 EEQNEWYFFS HKDKKYPSGT RTNRATTAGF WKATGRDKAV ISKYGIIGMR KTLVFYEGRA 120 PNGRKTDWIM HEYRLQSSEN GPPQEEGWVV CRAFKKQNTN QRPCLDTYNP RYYIGDHNCS 180 GVEALSDACM TAHLVNSIAA QTFHEQSFGC EMELGCGQTH LNHALEIPPL GSPSLPTNLA 240 VKECFEPSIV ANEDHGIERH DCRGEFIDWK VLDRLLASQL NESVASSNSN VPLNPLDYDI 300 DARNQDHFLS F |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
1ut4_A | 5e-52 | 6 | 162 | 16 | 171 | NO APICAL MERISTEM PROTEIN |
1ut4_B | 5e-52 | 6 | 162 | 16 | 171 | NO APICAL MERISTEM PROTEIN |
1ut7_A | 5e-52 | 6 | 162 | 16 | 171 | NO APICAL MERISTEM PROTEIN |
1ut7_B | 5e-52 | 6 | 162 | 16 | 171 | NO APICAL MERISTEM PROTEIN |
3swm_A | 5e-52 | 6 | 162 | 19 | 174 | NAC domain-containing protein 19 |
3swm_B | 5e-52 | 6 | 162 | 19 | 174 | NAC domain-containing protein 19 |
3swm_C | 5e-52 | 6 | 162 | 19 | 174 | NAC domain-containing protein 19 |
3swm_D | 5e-52 | 6 | 162 | 19 | 174 | NAC domain-containing protein 19 |
3swp_A | 5e-52 | 6 | 162 | 19 | 174 | NAC domain-containing protein 19 |
3swp_B | 5e-52 | 6 | 162 | 19 | 174 | NAC domain-containing protein 19 |
3swp_C | 5e-52 | 6 | 162 | 19 | 174 | NAC domain-containing protein 19 |
3swp_D | 5e-52 | 6 | 162 | 19 | 174 | NAC domain-containing protein 19 |
4dul_A | 5e-52 | 6 | 162 | 16 | 171 | NAC domain-containing protein 19 |
4dul_B | 5e-52 | 6 | 162 | 16 | 171 | NAC domain-containing protein 19 |
Search in ModeBase |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Transcription activator that binds to the secondary wall NAC binding element (SNBE), 5'-(T/A)NN(C/T)(T/C/G)TNNNNNNNA(A/C)GN(A/C/T)(A/T)-3', in the promoter of target genes (By similarity). Involved in xylem formation by promoting the expression of secondary wall-associated transcription factors and of genes involved in secondary wall biosynthesis and programmed cell death, genes driven by the secondary wall NAC binding element (SNBE). Triggers thickening of secondary walls (PubMed:25148240). {ECO:0000250|UniProtKB:Q9LVA1, ECO:0000269|PubMed:25148240}. |
Regulation -- Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | INDUCTION: Induced by chitin (e.g. chitooctaose) (PubMed:17722694). Accumulates in plants exposed to callus induction medium (CIM) (PubMed:17581762). {ECO:0000269|PubMed:17581762, ECO:0000269|PubMed:17722694}. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_008781655.1 | 0.0 | NAC domain-containing protein 37-like | ||||
Swissprot | Q9SL41 | 1e-106 | NAC37_ARATH; NAC domain-containing protein 37 | ||||
TrEMBL | A0A2H3XCG7 | 0.0 | A0A2H3XCG7_PHODC; NAC domain-containing protein 37-like | ||||
STRING | XP_008781655.1 | 0.0 | (Phoenix dactylifera) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP2594 | 37 | 91 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT2G18060.1 | 1e-108 | vascular related NAC-domain protein 1 |
Publications ? help Back to Top | |||
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