PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID PDK_30s671251g012
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Arecales; Arecaceae; Coryphoideae; Phoeniceae; Phoenix
Family NAC
Protein Properties Length: 311aa    MW: 35550.8 Da    PI: 5.4035
Description NAC family protein
Gene Model
Gene Model ID Type Source Coding Sequence
PDK_30s671251g012genomePDKView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1NAM173.27.6e-5481352128
                NAM   2 ppGfrFhPtdeelvveyLkkkvegkkleleevikevdiykvePwdLpk...kvkaeekewyfFskrdkkyatgkrknratksgyWkatgkdk 90 
                        ppGfrFhPt+eelv +yL++kv+++k++l evi+++d+y++ePwdL+      ++e++ewyfFs++dkky++g+r+nrat++g+Wkatg+dk
  PDK_30s671251g012   8 PPGFRFHPTEEELVGYYLARKVSSQKIDL-EVITDIDLYRIEPWDLQDrckLGYEEQNEWYFFSHKDKKYPSGTRTNRATTAGFWKATGRDK 98 
                        9****************************.99**************952432234677********************************** PP

                NAM  91 evlskkgelvglkktLvfykgrapkgektdWvmheyrl 128
                        +v+s k   +g++ktLvfy+grap+g+ktdW+mheyrl
  PDK_30s671251g012  99 AVIS-KYGIIGMRKTLVFYEGRAPNGRKTDWIMHEYRL 135
                        ****.7889***************************98 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF1019414.97E-605156IPR003441NAC domain
PROSITE profilePS5100558.5587156IPR003441NAC domain
PfamPF023652.1E-288135IPR003441NAC domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 311 aa     Download sequence    Send to blast
MEVESCIPPG FRFHPTEEEL VGYYLARKVS SQKIDLEVIT DIDLYRIEPW DLQDRCKLGY  60
EEQNEWYFFS HKDKKYPSGT RTNRATTAGF WKATGRDKAV ISKYGIIGMR KTLVFYEGRA  120
PNGRKTDWIM HEYRLQSSEN GPPQEEGWVV CRAFKKQNTN QRPCLDTYNP RYYIGDHNCS  180
GVEALSDACM TAHLVNSIAA QTFHEQSFGC EMELGCGQTH LNHALEIPPL GSPSLPTNLA  240
VKECFEPSIV ANEDHGIERH DCRGEFIDWK VLDRLLASQL NESVASSNSN VPLNPLDYDI  300
DARNQDHFLS F
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1ut4_A5e-52616216171NO APICAL MERISTEM PROTEIN
1ut4_B5e-52616216171NO APICAL MERISTEM PROTEIN
1ut7_A5e-52616216171NO APICAL MERISTEM PROTEIN
1ut7_B5e-52616216171NO APICAL MERISTEM PROTEIN
3swm_A5e-52616219174NAC domain-containing protein 19
3swm_B5e-52616219174NAC domain-containing protein 19
3swm_C5e-52616219174NAC domain-containing protein 19
3swm_D5e-52616219174NAC domain-containing protein 19
3swp_A5e-52616219174NAC domain-containing protein 19
3swp_B5e-52616219174NAC domain-containing protein 19
3swp_C5e-52616219174NAC domain-containing protein 19
3swp_D5e-52616219174NAC domain-containing protein 19
4dul_A5e-52616216171NAC domain-containing protein 19
4dul_B5e-52616216171NAC domain-containing protein 19
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtTranscription activator that binds to the secondary wall NAC binding element (SNBE), 5'-(T/A)NN(C/T)(T/C/G)TNNNNNNNA(A/C)GN(A/C/T)(A/T)-3', in the promoter of target genes (By similarity). Involved in xylem formation by promoting the expression of secondary wall-associated transcription factors and of genes involved in secondary wall biosynthesis and programmed cell death, genes driven by the secondary wall NAC binding element (SNBE). Triggers thickening of secondary walls (PubMed:25148240). {ECO:0000250|UniProtKB:Q9LVA1, ECO:0000269|PubMed:25148240}.
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: Induced by chitin (e.g. chitooctaose) (PubMed:17722694). Accumulates in plants exposed to callus induction medium (CIM) (PubMed:17581762). {ECO:0000269|PubMed:17581762, ECO:0000269|PubMed:17722694}.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_008781655.10.0NAC domain-containing protein 37-like
SwissprotQ9SL411e-106NAC37_ARATH; NAC domain-containing protein 37
TrEMBLA0A2H3XCG70.0A0A2H3XCG7_PHODC; NAC domain-containing protein 37-like
STRINGXP_008781655.10.0(Phoenix dactylifera)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP25943791
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G18060.11e-108vascular related NAC-domain protein 1
Publications ? help Back to Top
  1. Duarte JM, et al.
    Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis.
    Mol. Biol. Evol., 2006. 23(2): p. 469-78
    [PMID:16280546]
  2. Negi S,Tak H,Ganapathi TR
    Cloning and functional characterization of MusaVND1 using transgenic banana plants.
    Transgenic Res., 2015. 24(3): p. 571-85
    [PMID:25523085]
  3. Tan TT, et al.
    Transcription Factors VND1-VND3 Contribute to Cotyledon Xylem Vessel Formation.
    Plant Physiol., 2018. 176(1): p. 773-789
    [PMID:29133368]