PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

PDK_30s671251g011

Organism

Phoenix dactylifera

Taxonomic ID

42345

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Arecales; Arecaceae; Coryphoideae; Phoeniceae; Phoenix

Family

C2H2

Protein Properties

Length: 465aa MW: 51495.6 Da PI: 6.5429

Description

C2H2 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
PDK_30s671251g011	genome	PDK	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-C2H2	20	1.8e-06	218	239	2	23
EETTTTEEESSHHHHHHHHHHT CS zf-C2H2 2 kCpdCgksFsrksnLkrHirtH 23 C++C k F+r+ nL+ H+r H PDK_30s671251g011 218 FCSICRKGFKRSANLRMHMRGH 239 6*******************98 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SuperFamily	SSF57667	2.61E-5	216	241	No hit	No description
SMART	SM00355	0.0074	217	239	IPR015880	Zinc finger, C2H2-like
PROSITE profile	PS50157	11.261	217	244	IPR007087	Zinc finger, C2H2
Gene3D	G3DSA:3.30.160.60	1.4E-5	218	268	IPR013087	Zinc finger C2H2-type/integrase DNA-binding domain
PROSITE pattern	PS00028	0	219	239	IPR007087	Zinc finger, C2H2
SMART	SM00355	70	266	299	IPR015880	Zinc finger, C2H2-like
SMART	SM00355	21	304	330	IPR015880	Zinc finger, C2H2-like

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0003676	Molecular Function	nucleic acid binding
GO:0046872	Molecular Function	metal ion binding

Sequence ? help Back to Top
Protein Sequence Length: 465 aa Download sequence Send to blast
MDHERMPSFE ASSSTEDINS NPLFTQFDSK ILSYGAGSEQ SFPEYPQNLD SSSIWSSHTG 60 KVVKPPDQAA PFANNQANPA VDWDPRSMLS KLIFIDQKIH QVQDIILLFL PSINNTLMSN 120 IPPVAQMTGT IGSTSSLALN GILQQNKDFP WKTSKAMQHR DLIKSLTHTG DEGIKPVPIN 180 HHDAKDHKDS ENGEDLPPSS YEVLEPKKEE ILAPHTHFCS ICRKGFKRSA NLRMHMRGHG 240 DEYKSPAALA KPSNEASSES MALKRYSCPF IGCKRNKEHE KFQPLKTILC VKNHYKRSHC 300 DKSYTCSRCN TKKFSVLADL KTHEKHCGRH RWLCSCGTTF SRKDKLLGHF NLFPGHSPAI 360 SMGDVKASGV ADQGRSNETM TEMGSLGSDF LGNAMDDVDD LDLEDADDDP GSFSPLNFGS 420 FNFGGLDDIP QQSFDASESL FSYFPSGSCN GVQMNGDNSN LNHLG

Sequence ? help Back to Top

Protein Sequence Length: 465 aa Download sequence Send to blast

MDHERMPSFE ASSSTEDINS NPLFTQFDSK ILSYGAGSEQ SFPEYPQNLD SSSIWSSHTG  60
KVVKPPDQAA PFANNQANPA VDWDPRSMLS KLIFIDQKIH QVQDIILLFL PSINNTLMSN  120
IPPVAQMTGT IGSTSSLALN GILQQNKDFP WKTSKAMQHR DLIKSLTHTG DEGIKPVPIN  180
HHDAKDHKDS ENGEDLPPSS YEVLEPKKEE ILAPHTHFCS ICRKGFKRSA NLRMHMRGHG  240
DEYKSPAALA KPSNEASSES MALKRYSCPF IGCKRNKEHE KFQPLKTILC VKNHYKRSHC  300
DKSYTCSRCN TKKFSVLADL KTHEKHCGRH RWLCSCGTTF SRKDKLLGHF NLFPGHSPAI  360
SMGDVKASGV ADQGRSNETM TEMGSLGSDF LGNAMDDVDD LDLEDADDDP GSFSPLNFGS  420
FNFGGLDDIP QQSFDASESL FSYFPSGSCN GVQMNGDNSN LNHLG

Functional Description ? help Back to Top
Source	Description
UniProt	Probable transcription factor that may be involved in aluminum tolerance. {ECO:0000250}.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_008781514.1	0.0	zinc finger protein STOP1 homolog
Refseq	XP_017696850.1	0.0	zinc finger protein STOP1 homolog
Swissprot	Q943I6	1e-147	STOP1_ORYSJ; Zinc finger protein STOP1 homolog
TrEMBL	A0A2H3XBY9	0.0	A0A2H3XBY9_PHODC; zinc finger protein STOP1 homolog
STRING	XP_008781514.1	0.0	(Phoenix dactylifera)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Monocots	OGMP1512	38	111

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G34370.2	1e-123	C2H2 family protein

Publications ? help Back to Top
Kikuchi S, et al. Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice. Science, 2003. 301(5631): p. 376-9 [PMID:12869764]