PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | PDK_30s669462g005 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Arecales; Arecaceae; Coryphoideae; Phoeniceae; Phoenix
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Family | C2H2 | ||||||||
Protein Properties | Length: 176aa MW: 18793.3 Da PI: 8.3884 | ||||||||
Description | C2H2 family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | zf-C2H2 | 12.7 | 0.00037 | 11 | 33 | 1 | 23 |
EEETTTTEEESSHHHHHHHHHHT CS zf-C2H2 1 ykCpdCgksFsrksnLkrHirtH 23 y+C+ C+k+F++ L H +H PDK_30s669462g005 11 YECKTCNKCFPSFQALGGHRASH 33 99**********99999998887 PP | |||||||
2 | zf-C2H2 | 14.7 | 9.1e-05 | 88 | 110 | 1 | 23 |
EEETTTTEEESSHHHHHHHHHHT CS zf-C2H2 1 ykCpdCgksFsrksnLkrHirtH 23 ++C++Cg Fs+ L H+r+H PDK_30s669462g005 88 HECSICGSEFSSGQALGGHMRRH 110 78********************9 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF57667 | 1.39E-9 | 10 | 33 | No hit | No description |
Pfam | PF13912 | 4.8E-12 | 10 | 35 | IPR007087 | Zinc finger, C2H2 |
PROSITE profile | PS50157 | 10.221 | 11 | 38 | IPR007087 | Zinc finger, C2H2 |
SMART | SM00355 | 0.082 | 11 | 33 | IPR015880 | Zinc finger, C2H2-like |
PROSITE pattern | PS00028 | 0 | 13 | 33 | IPR007087 | Zinc finger, C2H2 |
SuperFamily | SSF57667 | 1.39E-9 | 83 | 110 | No hit | No description |
Gene3D | G3DSA:3.30.160.60 | 8.7E-4 | 86 | 110 | IPR013087 | Zinc finger C2H2-type/integrase DNA-binding domain |
Pfam | PF13912 | 3.1E-12 | 87 | 112 | IPR007087 | Zinc finger, C2H2 |
PROSITE profile | PS50157 | 9.764 | 88 | 110 | IPR007087 | Zinc finger, C2H2 |
SMART | SM00355 | 0.02 | 88 | 110 | IPR015880 | Zinc finger, C2H2-like |
PROSITE pattern | PS00028 | 0 | 90 | 110 | IPR007087 | Zinc finger, C2H2 |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0003676 | Molecular Function | nucleic acid binding | ||||
GO:0046872 | Molecular Function | metal ion binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 176 aa Download sequence Send to blast |
MANGKAGFLV YECKTCNKCF PSFQALGGHR ASHKKPKLAI PMTGTEAKKA AIDEDSLQIS 60 MNSSISKSIM AATNTNSTSI SNNKPRVHEC SICGSEFSSG QALGGHMRRH RPVSIPAATS 120 EPKKERNVNL SLDLNLPAPS DDDHEEVPKS PSAVALAFES KQPLVISASA LVDCHY |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Probable transcription factor that may be involved in stress responses. {ECO:0000250}. |
Regulation -- Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | INDUCTION: By gibberellin and H(2)O(2). Down-regulated by ascorbate. {ECO:0000269|PubMed:12837949, ECO:0000269|PubMed:16244149}. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_008779116.1 | 1e-125 | zinc finger protein ZAT5-like | ||||
Swissprot | Q681X4 | 3e-39 | ZAT5_ARATH; Zinc finger protein ZAT5 | ||||
TrEMBL | A0A2H3X6J6 | 1e-124 | A0A2H3X6J6_PHODC; zinc finger protein ZAT5-like | ||||
STRING | XP_008779116.1 | 1e-125 | (Phoenix dactylifera) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP2013 | 32 | 85 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G04390.1 | 1e-38 | C2H2 family protein |
Publications ? help Back to Top | |||
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