PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | PDK_30s668621g001 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Arecales; Arecaceae; Coryphoideae; Phoeniceae; Phoenix
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Family | LBD | ||||||||
Protein Properties | Length: 171aa MW: 19255.2 Da PI: 8.3828 | ||||||||
Description | LBD family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | DUF260 | 139.3 | 1.3e-43 | 6 | 105 | 1 | 100 |
DUF260 1 aCaaCkvlrrkCakdCvlapyfpaeqpkkfanvhklFGasnvlkllkalpeeeredamsslvyeAearardPvyGavgvilklqqqleqlka 92 +Ca+Ck lrr+CakdC++apyfp+++p+kfa+vhk+FGasnv+k+l+++p +r da+sslv+eA+ar+rdPvyG+vg i+ lq+q++ql++ PDK_30s668621g001 6 PCASCKWLRRRCAKDCIFAPYFPSDDPHKFAIVHKVFGASNVSKMLQEIPVYQRADAVSSLVFEANARMRDPVYGCVGAISFLQNQVSQLQT 97 7******************************************************************************************* PP DUF260 93 elallkee 100 +la++++e PDK_30s668621g001 98 QLAMAQAE 105 ****9987 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS50891 | 26.37 | 5 | 106 | IPR004883 | Lateral organ boundaries, LOB |
Pfam | PF03195 | 3.8E-43 | 6 | 103 | IPR004883 | Lateral organ boundaries, LOB |
Sequence ? help Back to Top |
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Protein Sequence Length: 171 aa Download sequence Send to blast |
MVAGSPCASC KWLRRRCAKD CIFAPYFPSD DPHKFAIVHK VFGASNVSKM LQEIPVYQRA 60 DAVSSLVFEA NARMRDPVYG CVGAISFLQN QVSQLQTQLA MAQAEILCIQ MQQESSMAYQ 120 QMHADGKSFL LHNSINSIPQ FMNFSSGSVV QEPFKIESLR HRHVSLPFFN F |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
5ly0_A | 3e-48 | 3 | 107 | 8 | 112 | LOB family transfactor Ramosa2.1 |
5ly0_B | 3e-48 | 3 | 107 | 8 | 112 | LOB family transfactor Ramosa2.1 |
Search in ModeBase |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_008799794.1 | 1e-125 | LOB domain-containing protein 12-like | ||||
Swissprot | Q8LBW3 | 1e-70 | LBD12_ARATH; LOB domain-containing protein 12 | ||||
TrEMBL | A0A2H3YK29 | 1e-124 | A0A2H3YK29_PHODC; LOB domain-containing protein 12-like | ||||
STRING | XP_008799794.1 | 1e-125 | (Phoenix dactylifera) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP882 | 38 | 150 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT2G30130.1 | 6e-73 | LBD family protein |
Publications ? help Back to Top | |||
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