PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | PDK_30s668601g006 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Arecales; Arecaceae; Coryphoideae; Phoeniceae; Phoenix
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Family | VOZ | ||||||||
Protein Properties | Length: 180aa MW: 21058.6 Da PI: 9.567 | ||||||||
Description | VOZ family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | VOZ | 238.1 | 1.7e-73 | 1 | 123 | 95 | 217 |
VOZ 95 lfdlsllegetirewlffdkprrafesgnrkqrslpdysgrgwhesrkqvmkefgglkrsyymdpqpsssfewhlyeyeineldalalyrle 186 lfdls+lege++rewlffdkprrafesgnrkqrslpdy grgwhesrkqvmkefgglkrsyymdpqp+++fewhl+eyei+++d+lalyrle PDK_30s668601g006 1 LFDLSVLEGESLREWLFFDKPRRAFESGNRKQRSLPDYCGRGWHESRKQVMKEFGGLKRSYYMDPQPLTHFEWHLFEYEISNCDDLALYRLE 92 8******************************************************************************************* PP VOZ 187 lklvdekksakgkvskdsladlqkklgrlta 217 +klvd+kksa++k++++sl dlq+++grl+a PDK_30s668601g006 93 FKLVDAKKSARAKLTSNSLLDLQQQMGRLNA 123 ****************************986 PP |
Sequence ? help Back to Top |
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Protein Sequence Length: 180 aa Download sequence Send to blast |
LFDLSVLEGE SLREWLFFDK PRRAFESGNR KQRSLPDYCG RGWHESRKQV MKEFGGLKRS 60 YYMDPQPLTH FEWHLFEYEI SNCDDLALYR LEFKLVDAKK SARAKLTSNS LLDLQQQMGR 120 LNAENSVDNK KNGKSRTKAN QKDIAENIYS TPNTANQKEN EINLGHPQHE RNHRGKVLGQ |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Transcriptional activator acting positively in the phytochrome B signaling pathway. Functions redundantly with VOZ2 to promote flowering downstream of phytochrome B (phyB). Down-regulates 'FLOWERING LOCUS C' (FLC) and up-regulates 'FLOWERING LOCUS T' (FT). Binds to the 38-bp cis-acting region of the AVP1 gene. Interacts with phyB in the cytoplasm and is translocated to the nucleus at signal transmission, where it is subjected to degradation in a phytochrome-dependent manner. {ECO:0000269|PubMed:15295067, ECO:0000269|PubMed:22904146}. |
Regulation -- Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | INDUCTION: By far-red light. {ECO:0000269|PubMed:22904146}. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_008798279.1 | 1e-115 | transcription factor VOZ1 isoform X1 | ||||
Refseq | XP_008798281.1 | 1e-116 | transcription factor VOZ1 isoform X3 | ||||
Refseq | XP_008798282.1 | 1e-116 | transcription factor VOZ1 isoform X4 | ||||
Swissprot | Q9SGQ0 | 5e-69 | VOZ1_ARATH; Transcription factor VOZ1 | ||||
TrEMBL | A0A2H3YG35 | 1e-114 | A0A2H3YG35_PHODC; transcription factor VOZ1 isoform X3 | ||||
TrEMBL | A0A2H3YGG0 | 1e-114 | A0A2H3YGG0_PHODC; transcription factor VOZ1 isoform X1 | ||||
TrEMBL | A0A2H3YGR3 | 1e-114 | A0A2H3YGR3_PHODC; transcription factor VOZ1 isoform X4 | ||||
STRING | XP_008798279.1 | 1e-115 | (Phoenix dactylifera) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP2343 | 38 | 88 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G28520.2 | 2e-71 | vascular plant one zinc finger protein |
Publications ? help Back to Top | |||
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