PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID PDK_30s668421g002
Organism
Phoenix dactylifera
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Arecales; Arecaceae; Coryphoideae; Phoeniceae; Phoenix
Family bHLH
Protein Properties Length: 504aa    MW: 56360.4 Da    PI: 4.8078
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
PDK_30s668421g002genomePDKView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH40.26e-13306348754
                        HHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHH CS
                HLH   7 erErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksL 54 
                        + Er+RR+++N++++ Lr l+P++     +K + a+i+  A+eYIk+L
  PDK_30s668421g002 306 ATERQRREQLNEKYQALRLLVPNP-----TKSDRASIVGDAIEYIKEL 348
                        68**********************.....9****************98 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5088814.939299348IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003531.0E-12305354IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.101.5E-12306357IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000102.1E-10306348IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamilySSF474594.58E-14306366IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000834.82E-11308353No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0009555Biological Processpollen development
GO:0048658Biological Processanther wall tapetum development
GO:0052543Biological Processcallose deposition in cell wall
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 504 aa     Download sequence    Send to blast
MFSETILFAK MFDENSYLDP RHDPNPLPAT LVDSPSLAPI YNNSNSNSNN NINNNLEDNI  60
RISNFSLEDL SNPNNLPSDE TAIIMGLDHL QHQLGFDLEQ ELHSHMIQDT PPMGSTNIWD  120
STMQAIQDST IHHQQNYEDQ QQRIAAQQSL QSYDATLYPD PQSHIVAPDL LNLLKLPTVA  180
PVFPSTTSIS FSNPSLNPGN IPLDVYSELP GAAVPDNGPL LYDSSLHLGY PAPQPHLLRD  240
LFHSLPQNYG LFCGVDEREA MVGVGGGIGG GHVFQDMDER QFDSAVLDYR REMGGLGKGG  300
VKPSFATERQ RREQLNEKYQ ALRLLVPNPT KSDRASIVGD AIEYIKELLR TVEELKLLVG  360
KKRHGRERIK MMKMEDEGTA DMESSSMRPL RDDNDHPFNG ALRSSWLQRR SKESIVDVRI  420
IDDEVYIKLI QKKKANCLLY IAEVLDELQL ELIHASGGNI GDHYSFIFNT KICEGSSTYA  480
GAIAKKVLEV VDRQQPVLTL PASF
Functional Description ? help Back to Top
Source Description
UniProtTranscription factor involved in the regulation of tapetum programmed cell death (PCD) and degradation during male reproductive development (PubMed:23519457, PubMed:23385589). Interacts with TDR and promote tapetal PCD by regulating the expression of RTS, and the two lipid-transfer proteins C4 and C6, which function in microspore development (PubMed:23519457). Acts downstream from and interacts with TDR in the regulation of tapetal PCD. Regulates directly the aspartic protease AP25 and AP37 during tapetal PCD (PubMed:23385589). May not target the cysteine protease CP1 (PubMed:23519457, PubMed:23385589). {ECO:0000269|PubMed:23385589, ECO:0000269|PubMed:23519457}.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_008800057.10.0transcription factor EAT1-like
SwissprotQ7X8R01e-149EAT1_ORYSJ; Transcription factor EAT1
TrEMBLA0A2H3YKC00.0A0A2H3YKC0_PHODC; transcription factor EAT1-like
STRINGXP_008800057.10.0(Phoenix dactylifera)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP19043796
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G31210.12e-67bHLH family protein