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PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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| Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
| Basic Information? help Back to Top | |||||||||
|---|---|---|---|---|---|---|---|---|---|
| TF ID | PDK_30s667341g001 | ||||||||
| Organism | |||||||||
| Taxonomic ID | |||||||||
| Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Arecales; Arecaceae; Coryphoideae; Phoeniceae; Phoenix
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| Family | Nin-like | ||||||||
| Protein Properties | Length: 272aa MW: 31531.8 Da PI: 7.5371 | ||||||||
| Description | Nin-like family protein | ||||||||
| Gene Model |
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| Signature Domain? help Back to Top | |||||||
|---|---|---|---|---|---|---|---|
| No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
| 1 | RWP-RK | 82.7 | 3.5e-26 | 147 | 196 | 3 | 52 |
RWP-RK 3 keisledlskyFslpikdAAkeLgvclTvLKriCRqyGIkRWPhRkiksl 52
+i l+++++yF+ pi+ AAke++v+lT+LK++CR++GI+RWPhRk+ksl
PDK_30s667341g001 147 TDIGLDEIKNYFYVPITRAAKEMNVGLTLLKKRCRELGIPRWPHRKMKSL 196
57999*******************************************97 PP
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| Protein Features ? help Back to Top | ||||||
|---|---|---|---|---|---|---|
| Database | Entry ID | E-value | Start | End | InterPro ID | Description |
| PROSITE profile | PS51519 | 17.768 | 131 | 216 | IPR003035 | RWP-RK domain |
| Pfam | PF02042 | 3.2E-21 | 149 | 196 | IPR003035 | RWP-RK domain |
| Sequence ? help Back to Top |
|---|
| Protein Sequence Length: 272 aa Download sequence Send to blast |
MDFNLMNSLM IVEEKDSFDW ALLGDPFPDV PLLSEKDALV PYPESLDQNY NDLHGSCPFS 60 DNLAALVPYQ QYSPPPFDKL AWDDNKKFAP HYGDAVSDIV TPLTIVTRSN DVYDGKNNYS 120 DPFEVFRVGY VEEKSTERST NGRPRVTDIG LDEIKNYFYV PITRAAKEMN VGLTLLKKRC 180 RELGIPRWPH RKMKSLRSLI HNVQELGNGA SGESIRRELE TLEEHRRLIE ENPQVELTER 240 TKKLRQACFK AHFKKRKALR KPCFDIRNKY YA |
| Annotation -- Protein ? help Back to Top | |||||||
|---|---|---|---|---|---|---|---|
| Source | Hit ID | E-value | Description | ||||
| Refseq | XP_017701342.1 | 1e-179 | protein RKD1-like | ||||
| TrEMBL | A0A2H3ZY12 | 1e-178 | A0A2H3ZY12_PHODC; protein RKD1-like | ||||
| STRING | XP_008807243.1 | 1e-168 | (Phoenix dactylifera) | ||||
| Orthologous Group ? help Back to Top | |||
|---|---|---|---|
| Lineage | Orthologous Group ID | Taxa Number | Gene Number |
| Monocots | OGMP4590 | 33 | 65 |
| Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
|---|---|---|---|---|---|---|
| Hit ID | E-value | Description | ||||
| AT5G66990.1 | 2e-32 | RWP-RK domain-containing protein | ||||
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for Bioinformatics, Peking University Last Modified: 2022-12-08 Questions or Comments, please contact  |
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