PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | PDK_30s667301g001 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Arecales; Arecaceae; Coryphoideae; Phoeniceae; Phoenix
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Family | NF-YA | ||||||||
Protein Properties | Length: 202aa MW: 22336.6 Da PI: 9.7859 | ||||||||
Description | NF-YA family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | CBFB_NFYA | 49.6 | 1.3e-15 | 168 | 202 | 1 | 36 |
CBFB_NFYA 1 deplYVNaKQyqrIlkRRqkRakleeekkldeksrk 36 +ep+YVNaKQy++Il+RRq+Rak+e ekk+ +k rk PDK_30s667301g001 168 EEPVYVNAKQYHGILRRRQSRAKAELEKKV-IKVRK 202 69***************************9.88876 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SMART | SM00521 | 8.0E-4 | 166 | 202 | IPR001289 | Nuclear transcription factor Y subunit A |
PROSITE profile | PS51152 | 21.102 | 167 | 202 | IPR001289 | Nuclear transcription factor Y subunit A |
Pfam | PF02045 | 3.5E-11 | 169 | 202 | IPR001289 | Nuclear transcription factor Y subunit A |
PROSITE pattern | PS00686 | 0 | 172 | 192 | IPR018362 | CCAAT-binding factor, conserved site |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0016602 | Cellular Component | CCAAT-binding factor complex | ||||
GO:0003677 | Molecular Function | DNA binding | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 202 aa Download sequence Send to blast |
MESRADGTNT VDANGQGTLP STINAQPWWR GPGFGVMSPA MLPDSASKSA SVNLPVGGAG 60 NKGGQAQSHD RADGTGDVCK EMQNIGTQRG SRACLSHLYQ LQYQQSLFHI LKCLFGLYVI 120 MKWACPTYSY SDPYFSRIMA PYGTQALVHP QLLGMPYTRM PLPLEMAEEP VYVNAKQYHG 180 ILRRRQSRAK AELEKKVIKV RK |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_008790783.1 | 1e-117 | nuclear transcription factor Y subunit A-1 | ||||
Refseq | XP_008790792.1 | 1e-117 | nuclear transcription factor Y subunit A-1 | ||||
Refseq | XP_026660955.1 | 1e-117 | nuclear transcription factor Y subunit A-1 | ||||
TrEMBL | A0A2H3XYY8 | 1e-116 | A0A2H3XYY8_PHODC; nuclear transcription factor Y subunit A-1 | ||||
STRING | XP_008790783.1 | 1e-116 | (Phoenix dactylifera) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP8205 | 36 | 49 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G12840.4 | 4e-33 | nuclear factor Y, subunit A1 |