PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID PDK_30s666001g001
Organism
Phoenix dactylifera
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Arecales; Arecaceae; Coryphoideae; Phoeniceae; Phoenix
Family HD-ZIP
Protein Properties Length: 766aa    MW: 83915.2 Da    PI: 6.1852
Description HD-ZIP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
PDK_30s666001g001genomePDKView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Homeobox63.14e-2096151156
                        TT--SS--HHHHHHHHHHHHHSSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHHHH CS
           Homeobox   1 rrkRttftkeqleeLeelFeknrypsaeereeLAkklgLterqVkvWFqNrRakek 56 
                        +++ +++t++q++e+e++F+ +++p+ ++r+eL+++lgL+  qVk+WFqN+R+++k
  PDK_30s666001g001  96 KKRYHRHTQHQIQEMENFFKTCPHPDDKQRKELSRELGLEPLQVKFWFQNKRTQMK 151
                        688999***********************************************999 PP
2START213.95.7e-672875071206
                        HHHHHHHHHHHHHHHHC-TT-EEEE....EXCCTTEEEEEEESSS......SCEEEEEEEECCSCHHHHHHHHHCCCGGCT-TT-S....EE CS
              START   1 elaeeaaqelvkkalaeepgWvkss....esengdevlqkfeeskv.....dsgealrasgvvdmvlallveellddkeqWdetla....ka 79 
                        ela +a++el+++a++ ep+W+       e +n++e+++ f+++ +      ++ea+r+++vv+m++ +l+e l+d++ qW+  +     +a
  PDK_30s666001g001 287 ELAVAAMEELIRMAQLCEPLWTPGLdcstETLNEEEYVRAFPRGIGpkpfgLKSEASRDTAVVIMNHINLLEMLMDVN-QWSMVFSsivsRA 377
                        57899*****************9888999**************999********************************.*******9**9** PP

                        EEEEEECTT......EEEEEEEEXXTTXX-SSX.EEEEEEEEEEE.TTS-EEEEEEEEE-TTS--.-TTSEE-EESSEEEEEEEECTCEEEE CS
              START  80 etlevissg......galqlmvaelqalsplvp.RdfvfvRyirqlgagdwvivdvSvdseqkppesssvvRaellpSgiliepksnghskv 164
                         tlev+s+g      galq+m+ae+q++splvp R+++fvRy++q+ +g+w++vdvS+ds ++ p+     R++++pSg+li++++ng+skv
  PDK_30s666001g001 378 ITLEVLSTGvagnynGALQVMSAEFQVPSPLVPtRESLFVRYCKQHADGTWAVVDVSLDSLRPSPT----SRCRRRPSGCLIQEMPNGYSKV 465
                        ***************************************************************996....9********************* PP

                        EEEE-EE--SSXXHHHHHHHHHHHHHHHHHHHHHHTXXXXXX CS
              START 165 twvehvdlkgrlphwllrslvksglaegaktwvatlqrqcek 206
                        +wvehv++++r++h+++++lv+sgla+gak+wv+tl+rqce+
  PDK_30s666001g001 466 IWVEHVEVDDRSVHNIYKPLVNSGLAFGAKRWVSTLDRQCER 507
                        ****************************************97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:1.10.10.602.2E-2177151IPR009057Homeodomain-like
SuperFamilySSF466899.61E-2084154IPR009057Homeodomain-like
PROSITE profilePS5007116.90893153IPR001356Homeobox domain
SMARTSM003891.2E-1994157IPR001356Homeobox domain
CDDcd000862.84E-1995154No hitNo description
PfamPF000461.8E-1796151IPR001356Homeobox domain
PROSITE patternPS000270128151IPR017970Homeobox, conserved site
PROSITE profilePS5084843.495278510IPR002913START domain
SuperFamilySSF559619.89E-36279509No hitNo description
CDDcd088758.19E-127282506No hitNo description
SMARTSM002349.1E-64287507IPR002913START domain
PfamPF018522.3E-55288507IPR002913START domain
Gene3DG3DSA:3.30.530.207.9E-6389506IPR023393START-like domain
SuperFamilySSF559611.98E-25526755No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0009845Biological Processseed germination
GO:0009913Biological Processepidermal cell differentiation
GO:0048497Biological Processmaintenance of floral organ identity
GO:0048825Biological Processcotyledon development
GO:0005634Cellular Componentnucleus
GO:0008289Molecular Functionlipid binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 766 aa     Download sequence    Send to blast
MIPARHVPSM MGRNAGASFG SSSALSLGQP NILEGQQLPL QHQHQQQNQL FEIPQTTTAE  60
SEMVRTREEE FESKSGSENI EGASGDDQDA NQRPRKKRYH RHTQHQIQEM ENFFKTCPHP  120
DDKQRKELSR ELGLEPLQVK FWFQNKRTQM KTQQERHENT QLRTENEKLR AENLRYKEAL  180
SNASCPNCGG PAALGEMSFD EHHLRIENAR LREEIDRISG IAAKYVGKPM VSYPLLSSPL  240
ASRSPMDLGV SGAFGVQPGI GGEMFGAGEL LRTVSGQPEM EKPMVIELAV AAMEELIRMA  300
QLCEPLWTPG LDCSTETLNE EEYVRAFPRG IGPKPFGLKS EASRDTAVVI MNHINLLEML  360
MDVNQWSMVF SSIVSRAITL EVLSTGVAGN YNGALQVMSA EFQVPSPLVP TRESLFVRYC  420
KQHADGTWAV VDVSLDSLRP SPTSRCRRRP SGCLIQEMPN GYSKVIWVEH VEVDDRSVHN  480
IYKPLVNSGL AFGAKRWVST LDRQCERLAS VMASNIPSGD IGVITTPEGR KSMLKLAERM  540
VISFCGGVTA STTHQWTTLS GSGAEDVRVM TRKSVDDPGR PPGIVLNAAT SFWLPVPPKR  600
VFDFLRNESS RSEWDILSNG GVVQEMAHIA NGRDHGNCVS LLRVNSANSN QSNMLILQES  660
CTDPTGSYVI YAPVDFAAMN VVLNGGDPNY VALLPSGFAI LPDGPTGSIG EVGSGGSLLT  720
VAFQILVDSV PTAKLSLGSV ATVNSLIACT VERIKAAVSG ENAQQA
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor. {ECO:0000250}.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_008808987.10.0homeobox-leucine zipper protein ROC2-like
SwissprotQ0J9X20.0ROC2_ORYSJ; Homeobox-leucine zipper protein ROC2
TrEMBLA0A2H3Z6W50.0A0A2H3Z6W5_PHODC; homeobox-leucine zipper protein ROC2-like
STRINGXP_008808987.10.0(Phoenix dactylifera)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP79938147
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G04890.10.0protodermal factor 2
Publications ? help Back to Top
  1. Chou IT,Gasser CS
    Characterization of the cyclophilin gene family of Arabidopsis thaliana and phylogenetic analysis of known cyclophilin proteins.
    Plant Mol. Biol., 1997. 35(6): p. 873-92
    [PMID:9426607]