PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID PDK_30s664961g002
Organism
Phoenix dactylifera
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Arecales; Arecaceae; Coryphoideae; Phoeniceae; Phoenix
Family AP2
Protein Properties Length: 388aa    MW: 42848.5 Da    PI: 6.4311
Description AP2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
PDK_30s664961g002genomePDKView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP253.37e-17156205155
                AP2   1 sgykGVrwdkkrgrWvAeIrdpsengkr.krfslgkfgtaeeAakaaiaarkkleg 55 
                        s y+GV++++++grW+++I+d      + k+++lg f+ta  Aa+a+++a+ k++g
  PDK_30s664961g002 156 SLYRGVTFYRRTGRWESHIWD------CgKQVYLGGFDTAHAAARAYDRAAIKFRG 205
                        57*******************......55************************997 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF541714.45E-16156214IPR016177DNA-binding domain
PfamPF008473.0E-9157205IPR001471AP2/ERF domain
PROSITE profilePS5103217.662157213IPR001471AP2/ERF domain
Gene3DG3DSA:3.30.730.104.8E-17157214IPR001471AP2/ERF domain
SMARTSM003802.3E-32157219IPR001471AP2/ERF domain
CDDcd000183.74E-11158215No hitNo description
CDDcd000189.79E-13248293No hitNo description
SuperFamilySSF541711.18E-6248292IPR016177DNA-binding domain
SMARTSM003803.9E-13249297IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 388 aa     Download sequence    Send to blast
MMLDLNLASS GESAEEKPLP DEDSGTSKSS VLNAEASSNA PDEDSCSTWP AAGFQFGILK  60
SAASAEGENE VEEEIEEDGN DASMESSFIT RQLFPPASPA VPPPPPLVAA SSSSSSRLHW  120
ADISFRQSDI PAGVRVLQQQ QQQVKKSRRG PRSRSSLYRG VTFYRRTGRW ESHIWDCGKQ  180
VYLGGFDTAH AAARAYDRAA IKFRGVDADI NFNLSDYEED LKQTKDLTKE EFVHILRRHS  240
TGFSRGSSKY RGVTLHKCGR WEARMGQFLG KKAYDKAAIK CNGRDAVTNF EPSTYEGELL  300
TETADATGHD VDLNLRISQP AARSPKRDQD STAIQFHFGS RSDAKKTVID IPSSQLAGLP  360
HRFQTAQCPT IFPTVELDIY VDKSRKNC
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor (By similarity). Involved in spikelet transition. Regulator of starch biosynthesis especially during seed development (e.g. endosperm starch granules); represses the expression of type I starch synthesis genes. Prevents lemma and palea elongation as well as grain growth (By similarity). {ECO:0000250|UniProtKB:P47927, ECO:0000250|UniProtKB:Q2TQ34}.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010920949.10.0APETALA2-like protein 1 isoform X2
SwissprotB8AXC31e-115AP21_ORYSI; APETALA2-like protein 1
TrEMBLA0A2H3XUP70.0A0A2H3XUP7_PHODC; ethylene-responsive transcription factor RAP2-7-like isoform X2
STRINGXP_008789029.10.0(Phoenix dactylifera)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP100832935
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G28550.22e-91related to AP2.7