PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID PDK_30s664721g002
Organism
Phoenix dactylifera
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Arecales; Arecaceae; Coryphoideae; Phoeniceae; Phoenix
Family ERF
Protein Properties Length: 128aa    MW: 14175.8 Da    PI: 5.4001
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
PDK_30s664721g002genomePDKView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP265.79.2e-211767255
                AP2  2 gykGVrwdkkrgrWvAeIrdpsengkr.krfslgkfgtaeeAakaaiaarkkleg 55
                       +y+GVr+++ +g+++AeIrd +    +  r++lg+f taeeAa+a+++a+ +++g
  PDK_30s664721g002 17 KYRGVRRRP-WGKYAAEIRDSTR---HgVRVWLGTFNTAEEAARAYDQAAYAMRG 67
                       8********.**********422...25*************************99 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5103223.7091775IPR001471AP2/ERF domain
Gene3DG3DSA:3.30.730.104.0E-321776IPR001471AP2/ERF domain
CDDcd000182.83E-281776No hitNo description
SMARTSM003802.6E-371781IPR001471AP2/ERF domain
SuperFamilySSF541714.97E-241776IPR016177DNA-binding domain
PfamPF008471.5E-151767IPR001471AP2/ERF domain
PRINTSPR003679.0E-121829IPR001471AP2/ERF domain
PRINTSPR003679.0E-124157IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0010200Biological Processresponse to chitin
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 128 aa     Download sequence    Send to blast
MEEDSPKTKE KEEGEVKYRG VRRRPWGKYA AEIRDSTRHG VRVWLGTFNT AEEAARAYDQ  60
AAYAMRGPLA VLNFPEEIRS SGTGSSSSPG GRGSSVSEPG KQVIELECLD DKLLEELLES  120
EEKGGKKK
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5wx9_A1e-341711314114Ethylene-responsive transcription factor ERF096
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtProbably acts as a transcriptional activator. Binds to the GCC-box pathogenesis-related promoter element. May be involved in the regulation of gene expression by stress factors and by components of stress signal transduction pathways (By similarity). {ECO:0000250}.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_008806913.14e-88ethylene-responsive transcription factor ERF096-like
SwissprotQ9LTC51e-36ERF98_ARATH; Ethylene-responsive transcription factor ERF098
TrEMBLA0A2H3Z1389e-87A0A2H3Z138_PHODC; ethylene-responsive transcription factor ERF096-like
STRINGXP_008806913.11e-87(Phoenix dactylifera)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP10337465
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G23220.11e-24ERF family protein
Publications ? help Back to Top
  1. Van den Broeck L, et al.
    From network to phenotype: the dynamic wiring of an Arabidopsis transcriptional network induced by osmotic stress.
    Mol. Syst. Biol., 2017. 13(12): p. 961
    [PMID:29269383]