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PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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| Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
| Basic Information? help Back to Top | |||||||||
|---|---|---|---|---|---|---|---|---|---|
| TF ID | PDK_30s664661g003 | ||||||||
| Organism | |||||||||
| Taxonomic ID | |||||||||
| Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Arecales; Arecaceae; Coryphoideae; Phoeniceae; Phoenix
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| Family | Nin-like | ||||||||
| Protein Properties | Length: 267aa MW: 30974.7 Da PI: 8.9001 | ||||||||
| Description | Nin-like family protein | ||||||||
| Gene Model |
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| Signature Domain? help Back to Top | |||||||
|---|---|---|---|---|---|---|---|
| No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
| 1 | RWP-RK | 62.2 | 8.7e-20 | 159 | 191 | 20 | 52 |
RWP-RK 20 dAAkeLgvclTvLKriCRqyGIkRWPhRkiksl 52
AAke++v++TvLK++CR++GI+RWPhRk+ksl
PDK_30s664661g003 159 RAAKEMNVGVTVLKKRCRELGIPRWPHRKMKSL 191
7******************************97 PP
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| Protein Features ? help Back to Top | ||||||
|---|---|---|---|---|---|---|
| Database | Entry ID | E-value | Start | End | InterPro ID | Description |
| PROSITE profile | PS51257 | 5 | 1 | 28 | No hit | No description |
| PROSITE profile | PS51519 | 12.4 | 124 | 211 | IPR003035 | RWP-RK domain |
| Pfam | PF02042 | 3.8E-15 | 159 | 191 | IPR003035 | RWP-RK domain |
| Sequence ? help Back to Top |
|---|
| Protein Sequence Length: 267 aa Download sequence Send to blast |
MGVMEKLKIF VVQEPVVAAS CLIAGFGCGA SNLAIVMFFL NYLFLQGMRF SRSWLVLESL 60 ETCVQYIITI LKMYSDVINC NLFKNFYAGL FLPAVVRPIL DSFETAKAVR LLLAVSLFPL 120 MWMDSDHLNS LMIIDEKDSF WALLGDPLLH VPPLQRWSRA AKEMNVGVTV LKKRCRELGI 180 PRWPHRKMKS LMTLMHNVEE LGNGASEESM RRELERLEEH RRLMEENPEI ELSERIKKLR 240 QACFKANYKR QKALRKPCFD LCNIYYS |
| Annotation -- Protein ? help Back to Top | |||||||
|---|---|---|---|---|---|---|---|
| Source | Hit ID | E-value | Description | ||||
| Refseq | XP_017701366.1 | 1e-72 | protein RKD4 | ||||
| TrEMBL | A0A2H3ZYY6 | 2e-71 | A0A2H3ZYY6_PHODC; protein RKD4 | ||||
| Orthologous Group ? help Back to Top | |||
|---|---|---|---|
| Lineage | Orthologous Group ID | Taxa Number | Gene Number |
| Monocots | OGMP4590 | 33 | 65 |
| Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
|---|---|---|---|---|---|---|
| Hit ID | E-value | Description | ||||
| AT5G53040.1 | 2e-26 | RWP-RK domain-containing protein | ||||
| ©2010-2022, Center
for Bioinformatics, Peking University Last Modified: 2022-12-08 Questions or Comments, please contact  |
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