PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | PDK_30s663881g012 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Arecales; Arecaceae; Coryphoideae; Phoeniceae; Phoenix
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Family | TALE | ||||||||
Protein Properties | Length: 230aa MW: 26929.8 Da PI: 7.9686 | ||||||||
Description | TALE family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | Homeobox | 29.6 | 1.2e-09 | 158 | 192 | 21 | 55 |
HSSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHHH CS Homeobox 21 knrypsaeereeLAkklgLterqVkvWFqNrRake 55 k +yps++++ LA+++gL+++q+ +WF N+R ++ PDK_30s663881g012 158 KWPYPSEAQKLALAQSTGLDQKQINNWFINQRKRH 192 579*****************************885 PP | |||||||
2 | ELK | 39.9 | 8.8e-14 | 112 | 133 | 1 | 22 |
ELK 1 ELKhqLlrKYsgyLgsLkqEFs 22 ELK qLlrKYsgyL+sLkqEF+ PDK_30s663881g012 112 ELKGQLLRKYSGYLSSLKQEFL 133 9********************8 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Pfam | PF03790 | 2.7E-7 | 1 | 18 | IPR005540 | KNOX1 |
SMART | SM01256 | 1.8E-22 | 12 | 63 | IPR005541 | KNOX2 |
Pfam | PF03791 | 1.4E-20 | 17 | 61 | IPR005541 | KNOX2 |
PROSITE profile | PS51213 | 11.226 | 112 | 132 | IPR005539 | ELK domain |
SMART | SM01188 | 1.4E-7 | 112 | 133 | IPR005539 | ELK domain |
Pfam | PF03789 | 1.5E-10 | 112 | 133 | IPR005539 | ELK domain |
PROSITE profile | PS50071 | 12.86 | 132 | 195 | IPR001356 | Homeobox domain |
SMART | SM00389 | 1.7E-13 | 134 | 199 | IPR001356 | Homeobox domain |
SuperFamily | SSF46689 | 4.9E-20 | 134 | 209 | IPR009057 | Homeodomain-like |
Gene3D | G3DSA:1.10.10.60 | 1.3E-28 | 137 | 197 | IPR009057 | Homeodomain-like |
CDD | cd00086 | 2.42E-12 | 144 | 196 | No hit | No description |
Pfam | PF05920 | 2.3E-17 | 152 | 191 | IPR008422 | Homeobox KN domain |
PROSITE pattern | PS00027 | 0 | 170 | 193 | IPR017970 | Homeobox, conserved site |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0009934 | Biological Process | regulation of meristem structural organization | ||||
GO:0048440 | Biological Process | carpel development | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0043565 | Molecular Function | sequence-specific DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 230 aa Download sequence Send to blast |
MAHPQYPRLL SAYVNCHKDP ALDQFMEAYC EMLTKYEQEL SKPFKEAMLF LSRIDSQFKS 60 LSLSTPPPPQ VLDWLGLTWC LTLAVLLERN GSSEEEFGAS ENYVDPQAED RELKGQLLRK 120 YSGYLSSLKQ EFLKKRKKGK LPKEARQQLL DWWNRHYKWP YPSEAQKLAL AQSTGLDQKQ 180 INNWFINQRK RHWKPSEEMQ FVVMDTAHPH YFMDNSLGNP FPLDCAPALL |
Nucleic Localization Signal ? help Back to Top | |||
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No. | Start | End | Sequence |
1 | 127 | 136 | LKQEFLKKRK |
2 | 133 | 137 | KKRKK |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | May have a role to play in formative events in ovule and embryo morphogenesis. Probably binds to the DNA sequence 5'-TGAC-3'. |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | DQ890420 | 0.0 | DQ890420.1 Elaeis guineensis class I KNOX-like 1 protein (KNOX1) mRNA, complete cds. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_010927330.1 | 1e-137 | homeobox protein knotted-1-like LET6 | ||||
Swissprot | O22299 | 1e-108 | LET6_SOLLC; Homeobox protein knotted-1-like LET6 | ||||
TrEMBL | A5H237 | 1e-136 | A5H237_ELAGV; Class I KNOX-like 1 protein | ||||
STRING | XP_008795979.1 | 1e-137 | (Phoenix dactylifera) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP21073 | 5 | 7 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G62360.1 | 4e-99 | KNOX/ELK homeobox transcription factor |