PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | PDK_30s663661g001 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Arecales; Arecaceae; Coryphoideae; Phoeniceae; Phoenix
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Family | WRKY | ||||||||
Protein Properties | Length: 243aa MW: 27177.7 Da PI: 10.0553 | ||||||||
Description | WRKY family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | WRKY | 31.2 | 4.5e-10 | 142 | 162 | 1 | 21 |
---SS-EEEEEEE--TT-SS- CS WRKY 1 ldDgynWrKYGqKevkgsefp 21 ldDgy+WrKYGqK+vk++++p PDK_30s663661g001 142 LDDGYKWRKYGQKVVKNTQHP 162 59****************998 PP | |||||||
2 | WRKY | 58.1 | 1.7e-18 | 184 | 223 | 20 | 59 |
S-EEEEEE-STT---EEEEEE-SSSTTEEEEEEES--SS- CS WRKY 20 fprsYYrCtsagCpvkkkversaedpkvveitYegeHnhe 59 + rsYYrCt+ +C+vkk+ver aedp++v++tYeg+H h+ PDK_30s663661g001 184 MCRSYYRCTQDNCRVKKRVERLAEDPRMVITTYEGRHAHS 223 68*************************************7 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Gene3D | G3DSA:2.20.25.80 | 4.4E-32 | 127 | 223 | IPR003657 | WRKY domain |
SuperFamily | SSF118290 | 7.06E-9 | 134 | 162 | IPR003657 | WRKY domain |
PROSITE profile | PS50811 | 21.953 | 137 | 225 | IPR003657 | WRKY domain |
SMART | SM00774 | 1.1E-30 | 142 | 224 | IPR003657 | WRKY domain |
Pfam | PF03106 | 1.6E-6 | 143 | 163 | IPR003657 | WRKY domain |
SuperFamily | SSF118290 | 2.09E-14 | 175 | 224 | IPR003657 | WRKY domain |
Pfam | PF03106 | 1.3E-12 | 184 | 222 | IPR003657 | WRKY domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0045893 | Biological Process | positive regulation of transcription, DNA-templated | ||||
GO:1901141 | Biological Process | regulation of lignin biosynthetic process | ||||
GO:1904369 | Biological Process | positive regulation of sclerenchyma cell differentiation | ||||
GO:0001046 | Molecular Function | core promoter sequence-specific DNA binding | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 243 aa Download sequence Send to blast |
MGTPHMSFTP QTSPLPHLAF SPYGLQHSLG GDAASHPRET LPSLPLKLRV GGSPQIGASA 60 VQRSSSNSPW PWNEEWSLNN KRSSVGEEHH SNNRNNSGTS NGPSSSINCL SVSALRMKKM 120 KARRKVREPR FCFKTMSEVD VLDDGYKWRK YGQKVVKNTQ HPSLALLNEK APVKGGQVMM 180 SCFMCRSYYR CTQDNCRVKK RVERLAEDPR MVITTYEGRH AHSPSHDEDD TGAAAASQIS 240 FFW |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
1wj2_A | 6e-22 | 133 | 222 | 8 | 74 | Probable WRKY transcription factor 4 |
2lex_A | 6e-22 | 133 | 222 | 8 | 74 | Probable WRKY transcription factor 4 |
Search in ModeBase |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Transcription factor. Interacts specifically with the W box (5'-(T)TGAC[CT]-3'), a frequently occurring elicitor-responsive cis-acting element (By similarity). {ECO:0000250}. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_008793465.1 | 1e-161 | probable WRKY transcription factor 13 | ||||
Swissprot | Q9SVB7 | 5e-53 | WRK13_ARATH; Probable WRKY transcription factor 13 | ||||
TrEMBL | A0A2H3Y4U7 | 1e-160 | A0A2H3Y4U7_PHODC; probable WRKY transcription factor 13 | ||||
STRING | XP_008793465.1 | 1e-160 | (Phoenix dactylifera) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP1138 | 38 | 130 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT4G39410.1 | 3e-46 | WRKY DNA-binding protein 13 |