PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

PDK_30s659791g002

Organism

Phoenix dactylifera

Taxonomic ID

42345

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Arecales; Arecaceae; Coryphoideae; Phoeniceae; Phoenix

Family

FAR1

Protein Properties

Length: 805aa MW: 91872.3 Da PI: 9.1663

Description

FAR1 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
PDK_30s659791g002	genome	PDK	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	FAR1	55.7	1.7e-17	53	136	1	90
FAR1 1 kfYneYAkevGFsvrkskskkskrngeitkrtfvCskegkreeekkktekerrtraetrtgCkaklkvkkekdgkwevtkleleHnHela 90 kfY++YA++vGF v++++s+ + ++g++ +++C k g++++e k r+r++ t+C a+++vk++ dg +++ +l+HnH+++ PDK_30s659791g002 53 KFYKRYARRVGFGVSVRRSSFT-KEGQCLYLELMCCKGGRKRPEPKF-----RKRTSATTNCPARIRVKLWGDGMLHLELANLDHNHPVS 136 6***************9998.6677************9988.....99999****************************987 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Pfam	PF03101	1.1E-15	53	137	IPR004330	FAR1 DNA binding domain
Pfam	PF10551	1.2E-32	258	351	IPR018289	MULE transposase domain
PROSITE profile	PS50966	8.827	545	581	IPR007527	Zinc finger, SWIM-type
SMART	SM00575	1.2E-4	556	583	IPR006564	Zinc finger, PMZ-type
Pfam	PF04434	3.7E-5	557	577	IPR007527	Zinc finger, SWIM-type

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0008270	Molecular Function	zinc ion binding

Sequence ? help Back to Top
Protein Sequence Length: 805 aa Download sequence Send to blast
MEEPSARPKN PRRARLARRD LNSKLDGDNA TDGGYDGVPE VGMVFKTHQE ASKFYKRYAR 60 RVGFGVSVRR SSFTKEGQCL YLELMCCKGG RKRPEPKFRK RTSATTNCPA RIRVKLWGDG 120 MLHLELANLD HNHPVSPSMA RFLSCYKQLG AAKKRGAEQM NDDGVLVQPE ELPPVPVDRL 180 GALEELLFSE SGHRSFVERG RLRLGEGDAE ALRLFFTRMQ AKNSNFFSVI DLDEEGCVRN 240 VFWADARSRA AYQYYNDVVA LDTTYVTNKY DMPLATFVGV NHHGQLVLLG CSFLADETTE 300 TYVWLLKAWL ACMSGHLPKA LISDHCKGIQ SAVAEVLPGI RHRLCLWQIM KRVPEKLGGL 360 AEYRAINKAM QKAVYDSLRV DEFEEDWRRM MEIYGIQGNE WLGSLYECRH AWAPVYLKDT 420 FWAGMSTTLR NETMTAFFDG YIDSKTSLKQ FLCKYEMALQ SKYEKEAQAD FETFHKRRPS 480 VSKFYMEEQL SKVYTLNMFK KFQDEIEAIM YCHASLVKSD GPVSTFDVKE CIFLDDGKRT 540 MNRNHGVLFN AEQKEVQCIC GSFQFRGILC RHALSVFKLQ QVHEIPSKYI LDRWKKDFKR 600 LHVMARSSND VVANNRVDRY DYLSMRCLQL VEVGVLSDKY QLALKLIREM EKFLLSDSTH 660 DDTQPKIKPR NLKTNKLNRN INQNVGNIIA SEKGNEEGGN PQVFPPGSQF GIPMNHSQYI 720 GHQAAIRPSI VYMFPGGFDP QTFGNGPMMP WIYQQMFQAA QKPKESPGPS AGQPTRKRKI 780 YRGHKPVEAT QEPKEPPAPA APAAG

Sequence ? help Back to Top

Protein Sequence Length: 805 aa Download sequence Send to blast

MEEPSARPKN PRRARLARRD LNSKLDGDNA TDGGYDGVPE VGMVFKTHQE ASKFYKRYAR  60
RVGFGVSVRR SSFTKEGQCL YLELMCCKGG RKRPEPKFRK RTSATTNCPA RIRVKLWGDG  120
MLHLELANLD HNHPVSPSMA RFLSCYKQLG AAKKRGAEQM NDDGVLVQPE ELPPVPVDRL  180
GALEELLFSE SGHRSFVERG RLRLGEGDAE ALRLFFTRMQ AKNSNFFSVI DLDEEGCVRN  240
VFWADARSRA AYQYYNDVVA LDTTYVTNKY DMPLATFVGV NHHGQLVLLG CSFLADETTE  300
TYVWLLKAWL ACMSGHLPKA LISDHCKGIQ SAVAEVLPGI RHRLCLWQIM KRVPEKLGGL  360
AEYRAINKAM QKAVYDSLRV DEFEEDWRRM MEIYGIQGNE WLGSLYECRH AWAPVYLKDT  420
FWAGMSTTLR NETMTAFFDG YIDSKTSLKQ FLCKYEMALQ SKYEKEAQAD FETFHKRRPS  480
VSKFYMEEQL SKVYTLNMFK KFQDEIEAIM YCHASLVKSD GPVSTFDVKE CIFLDDGKRT  540
MNRNHGVLFN AEQKEVQCIC GSFQFRGILC RHALSVFKLQ QVHEIPSKYI LDRWKKDFKR  600
LHVMARSSND VVANNRVDRY DYLSMRCLQL VEVGVLSDKY QLALKLIREM EKFLLSDSTH  660
DDTQPKIKPR NLKTNKLNRN INQNVGNIIA SEKGNEEGGN PQVFPPGSQF GIPMNHSQYI  720
GHQAAIRPSI VYMFPGGFDP QTFGNGPMMP WIYQQMFQAA QKPKESPGPS AGQPTRKRKI  780
YRGHKPVEAT QEPKEPPAPA APAAG

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_008791822.1	0.0	protein FAR1-RELATED SEQUENCE 6-like
TrEMBL	A0A2H3Y1J3	0.0	A0A2H3Y1J3_PHODC; protein FAR1-RELATED SEQUENCE 6-like
STRING	XP_008791822.1	0.0	(Phoenix dactylifera)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Monocots	OGMP18	32	967

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G52520.1	1e-142	FAR1-related sequence 6