PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | PDK_30s659141g002 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Arecales; Arecaceae; Coryphoideae; Phoeniceae; Phoenix
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Family | LSD | ||||||||
Protein Properties | Length: 169aa MW: 17759.7 Da PI: 8.6598 | ||||||||
Description | LSD family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | zf-LSD1 | 44.8 | 2.1e-14 | 7 | 31 | 1 | 25 |
zf-LSD1 1 CggCrtlLsYPrGApsVRCalCdtV 25 C+gCr+lL YPrGA++V+Ca+C+t+ PDK_30s659141g002 7 CNGCRNLLLYPRGATNVCCAICNTI 31 ***********************97 PP | |||||||
2 | zf-LSD1 | 44.4 | 2.7e-14 | 46 | 70 | 1 | 25 |
zf-LSD1 1 CggCrtlLsYPrGApsVRCalCdtV 25 CggCrtlL+Y+rGA VRCa+C+t+ PDK_30s659141g002 46 CGGCRTLLMYTRGANGVRCACCNTI 70 ***********************97 PP | |||||||
3 | zf-LSD1 | 46.4 | 6.3e-15 | 84 | 108 | 1 | 25 |
zf-LSD1 1 CggCrtlLsYPrGApsVRCalCdtV 25 Cg+Cr +L+YP+GApsV+Ca+C+ V PDK_30s659141g002 84 CGQCRSTLMYPYGAPSVKCAICHYV 108 **********************987 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
TIGRFAMs | TIGR01053 | 1.3E-13 | 4 | 34 | IPR005735 | Zinc finger, LSD1-type |
Pfam | PF06943 | 3.2E-12 | 7 | 31 | IPR005735 | Zinc finger, LSD1-type |
TIGRFAMs | TIGR01053 | 2.0E-16 | 43 | 72 | IPR005735 | Zinc finger, LSD1-type |
Pfam | PF06943 | 3.9E-12 | 46 | 70 | IPR005735 | Zinc finger, LSD1-type |
TIGRFAMs | TIGR01053 | 3.7E-12 | 81 | 110 | IPR005735 | Zinc finger, LSD1-type |
Pfam | PF06943 | 1.2E-13 | 84 | 108 | IPR005735 | Zinc finger, LSD1-type |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0000303 | Biological Process | response to superoxide | ||||
GO:0001666 | Biological Process | response to hypoxia | ||||
GO:0002240 | Biological Process | response to molecule of oomycetes origin | ||||
GO:0009626 | Biological Process | plant-type hypersensitive response | ||||
GO:0009862 | Biological Process | systemic acquired resistance, salicylic acid mediated signaling pathway | ||||
GO:0010104 | Biological Process | regulation of ethylene-activated signaling pathway | ||||
GO:0010310 | Biological Process | regulation of hydrogen peroxide metabolic process | ||||
GO:0010602 | Biological Process | regulation of 1-aminocyclopropane-1-carboxylate metabolic process | ||||
GO:0010618 | Biological Process | aerenchyma formation | ||||
GO:0043069 | Biological Process | negative regulation of programmed cell death |
Sequence ? help Back to Top |
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Protein Sequence Length: 169 aa Download sequence Send to blast |
MQSQLVCNGC RNLLLYPRGA TNVCCAICNT ITSVPPPGME MSQLVCGGCR TLLMYTRGAN 60 GVRCACCNTI NLARSANQVA HVNCGQCRST LMYPYGAPSV KCAICHYVTN IGASNMRVPI 120 PAARRPNESA VMPSSTSAAQ TVVVENPMTV DESGKLVSNV VVGVATGKK |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Putative zinc finger that may be involved in programmed cell death and defense response. {ECO:0000250}. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_008804686.1 | 1e-116 | protein LSD1-like | ||||
Refseq | XP_008804687.1 | 1e-116 | protein LSD1-like | ||||
Swissprot | Q2QMB3 | 3e-72 | LOL2_ORYSJ; Protein LOL2 | ||||
TrEMBL | A0A2H3YW45 | 1e-115 | A0A2H3YW45_PHODC; protein LSD1-like | ||||
STRING | XP_008804686.1 | 1e-116 | (Phoenix dactylifera) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP1347 | 38 | 124 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT4G20380.7 | 1e-68 | LSD family protein |
Publications ? help Back to Top | |||
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