PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID PDK_30s655271g007
Organism
Phoenix dactylifera
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Arecales; Arecaceae; Coryphoideae; Phoeniceae; Phoenix
Family G2-like
Protein Properties Length: 376aa    MW: 41393.8 Da    PI: 6.4384
Description G2-like family protein
Gene Model
Gene Model ID Type Source Coding Sequence
PDK_30s655271g007genomePDKView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1G2-like89.33.5e-28149202155
            G2-like   1 kprlrWtpeLHerFveaveqLGGsekAtPktilelmkvkgLtlehvkSHLQkYRl 55 
                        k +++WtpeLH+rFv+aveqL G +kA+P++ilelm++++Lt+++v+SHLQkYR+
  PDK_30s655271g007 149 KVKVDWTPELHRRFVQAVEQL-GVDKAVPSKILELMGIDCLTRYNVASHLQKYRS 202
                        5689*****************.********************************7 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5129418.774146205IPR017930Myb domain
SuperFamilySSF466893.23E-19147206IPR009057Homeodomain-like
Gene3DG3DSA:1.10.10.602.0E-27147205IPR009057Homeodomain-like
TIGRFAMsTIGR015571.2E-25149203IPR006447Myb domain, plants
PfamPF002492.2E-8152201IPR001005SANT/Myb domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 376 aa     Download sequence    Send to blast
MLPVSPLRGS NGDQRDGGVG RLVGDFSSDT LLEDINFDDL FMGFDNGDKL PDLEMDPAEI  60
FAEFSEGGEE DSSGMAMAAE STVGSDSGGQ QKGLLEGEME DLSRREEVMS ATTKEDPVAM  120
TAEIRSPSEV NRDRKSSVVA TKNSQGKRKV KVDWTPELHR RFVQAVEQLG VDKAVPSKIL  180
ELMGIDCLTR YNVASHLQKY RSRRKHMLAR EAEAVSLSQT PQMHATNVAC SRRNMNPWLG  240
PIIGFPPPPP PPSVQPFRPL HFGGHPPPLV SMRPRYLASW SPSPPWAPQS SPPPLPNPCY  300
WHHHCQRGSR EGWVPYVLTQ GTPCFPQALP TSFPAPSVPG VLPHPFHRPV PTLATRDWGS  360
QLLDAYPVSF SSSFSL
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1irz_A6e-17146201257ARR10-B
Search in ModeBase
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_008781857.10.0probable transcription factor GLK1
TrEMBLA0A2H3XCZ40.0A0A2H3XCZ4_PHODC; probable transcription factor GLK1
STRINGXP_008781857.10.0(Phoenix dactylifera)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP24153886
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G20570.11e-45GBF's pro-rich region-interacting factor 1