PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | PDK_30s655121g001 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Arecales; Arecaceae; Coryphoideae; Phoeniceae; Phoenix
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Family | B3 | ||||||||
Protein Properties | Length: 236aa MW: 26870.7 Da PI: 10.229 | ||||||||
Description | B3 family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | B3 | 99.1 | 2.6e-31 | 66 | 165 | 1 | 94 |
EEEE-..-HHHHTT-EE--HHH.HTT......---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-S CS B3 1 ffkvltpsdvlksgrlvlpkkfaeeh......ggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldg 86 f+k+ tpsdv+k++rlv+pk++ae+h + +++ l++ed g+ W+++++y+++s++yvltkGW++Fvk+++L++gD+v+F+++ PDK_30s655121g001 66 FDKAVTPSDVGKLNRLVIPKQHAEKHlplptgSAAACKGVLLSFEDAFGKMWRFRYSYWNSSQSYVLTKGWSRFVKEKRLQAGDVVTFQRST 157 89*************************9987533334899*************************************************875 PP SSEE..EE CS B3 87 rsefelvv 94 e+++++ PDK_30s655121g001 158 GPEKRFFI 165 55555565 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Gene3D | G3DSA:2.40.330.10 | 2.1E-40 | 60 | 170 | IPR015300 | DNA-binding pseudobarrel domain |
SuperFamily | SSF101936 | 8.11E-31 | 63 | 168 | IPR015300 | DNA-binding pseudobarrel domain |
CDD | cd10017 | 2.97E-25 | 64 | 156 | No hit | No description |
SMART | SM01019 | 1.1E-22 | 66 | 171 | IPR003340 | B3 DNA binding domain |
Pfam | PF02362 | 6.0E-28 | 66 | 167 | IPR003340 | B3 DNA binding domain |
PROSITE profile | PS50863 | 13.874 | 66 | 170 | IPR003340 | B3 DNA binding domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 236 aa Download sequence Send to blast |
MIDDILKESS KASNHQPLTE TDDEEEAELW FLRSRSKAEI VDMLRKHTYH DELQQSKRAF 60 RREHLFDKAV TPSDVGKLNR LVIPKQHAEK HLPLPTGSAA ACKGVLLSFE DAFGKMWRFR 120 YSYWNSSQSY VLTKGWSRFV KEKRLQAGDV VTFQRSTGPE KRFFIDWKPR AIGGRAEDGL 180 FQVVRLFGVN IIKTPAAAVG GDGGVGVVGW SKKGIRDMDQ LIPSPQHFKK QKIEAL |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
1wid_A | 9e-54 | 63 | 171 | 11 | 118 | DNA-binding protein RAV1 |
Search in ModeBase |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Probably acts as a transcriptional activator. Binds to the GCC-box pathogenesis-related promoter element. May be involved in the regulation of gene expression by stress factors and by components of stress signal transduction pathways (By similarity). Transcriptional repressor of flowering time on long day plants. Acts directly on FT expression by binding 5'-CAACA-3' and 5'-CACCTG-3 sequences (Probable). Functionally redundant with TEM1. {ECO:0000250, ECO:0000269|PubMed:18718758, ECO:0000305}. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_010924129.2 | 1e-134 | LOW QUALITY PROTEIN: AP2/ERF and B3 domain-containing transcription repressor RAV2-like | ||||
Swissprot | P82280 | 1e-74 | RAV2_ARATH; AP2/ERF and B3 domain-containing transcription repressor RAV2 | ||||
TrEMBL | A0A2H3Y084 | 1e-105 | A0A2H3Y084_PHODC; AP2/ERF and B3 domain-containing transcription factor RAV1 | ||||
STRING | XP_008791228.1 | 1e-106 | (Phoenix dactylifera) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP12947 | 29 | 34 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G68840.2 | 7e-74 | related to ABI3/VP1 2 |