PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

PDK_30s6550989g009

Organism

Phoenix dactylifera

Taxonomic ID

42345

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Arecales; Arecaceae; Coryphoideae; Phoeniceae; Phoenix

Family

G2-like

Protein Properties

Length: 279aa MW: 30729.3 Da PI: 7.3235

Description

G2-like family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
PDK_30s6550989g009	genome	PDK	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	G2-like	104.1	8.5e-33	45	99	1	55
G2-like 1 kprlrWtpeLHerFveaveqLGGsekAtPktilelmkvkgLtlehvkSHLQkYRl 55 k+rlrWt++LH+rFv+a++qLGG+++AtPk +l++m+v+g+t++hvkSHLQkYRl PDK_30s6550989g009 45 KQRLRWTSDLHDRFVDAITQLGGPDRATPKGVLRVMGVPGITIYHVKSHLQKYRL 99 79****************************************************8 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS51294	10.423	42	102	IPR017930	Myb domain
Gene3D	G3DSA:1.10.10.60	2.0E-31	43	100	IPR009057	Homeodomain-like
SuperFamily	SSF46689	6.09E-17	44	99	IPR009057	Homeodomain-like
TIGRFAMs	TIGR01557	6.0E-26	45	100	IPR006447	Myb domain, plants
Pfam	PF00249	7.2E-7	47	98	IPR001005	SANT/Myb domain
Pfam	PF14379	1.1E-23	131	177	IPR025756	MYB-CC type transcription factor, LHEQLE-containing domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 279 aa Download sequence Send to blast
MYHAKKFSTI SMLPHKAQGT EQLANAGVMG GSNVSNPINS GGSGKQRLRW TSDLHDRFVD 60 AITQLGGPDR ATPKGVLRVM GVPGITIYHV KSHLQKYRLA KYLPESPADG SKDEKKDSGD 120 SLSSMDSASG IQINEALKIQ MEVQKRLHEQ LEVQRQLQLR IEAQGKYLQK IIEEQQKLGG 180 ALKVTEESQK SSESPSASQD CLGGPSPLKK PRIADQSPDA THETPLPESK PDFIGQWNQE 240 FYESSVTHFA FDSRSEFKED GNNCGQPEKH FVGANADRS

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
6j4k_A	5e-23	44	102	1	59	Protein PHOSPHATE STARVATION RESPONSE 1
6j4k_B	5e-23	44	102	1	59	Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_A	5e-23	44	102	1	59	Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_C	5e-23	44	102	1	59	Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_D	5e-23	44	102	1	59	Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_F	5e-23	44	102	1	59	Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_H	5e-23	44	102	1	59	Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_J	5e-23	44	102	1	59	Protein PHOSPHATE STARVATION RESPONSE 1
Search in ModeBase

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_008788479.1	0.0	myb family transcription factor PHL7-like isoform X1
Swissprot	Q9SJW0	2e-77	PHL7_ARATH; Myb family transcription factor PHL7
TrEMBL	A0A2H3XTD4	0.0	A0A2H3XTD4_PHODC; myb family transcription factor PHL7-like isoform X1
STRING	XP_008788479.1	0.0	(Phoenix dactylifera)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Monocots	OGMP7913	33	43

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G01060.1	6e-52	G2-like family protein