PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

PDK_30s6550973g001

Organism

Phoenix dactylifera

Taxonomic ID

42345

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Arecales; Arecaceae; Coryphoideae; Phoeniceae; Phoenix

Family

Dof

Protein Properties

Length: 462aa MW: 50605.9 Da PI: 5.8361

Description

Dof family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
PDK_30s6550973g001	genome	PDK	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-Dof	126.6	7.5e-40	166	226	2	62
zf-Dof 2 kekalkcprCdstntkfCyynnyslsqPryfCkaCrryWtkGGalrnvPvGggrrknkkss 62 ++k l+cprC+s++tkfCyynny+++qPr+fCk+C+ryWt+GG++rnvPvG+grrknk+s PDK_30s6550973g001 166 PDKVLPCPRCNSMETKFCYYNNYNVNQPRHFCKNCQRYWTAGGTMRNVPVGAGRRKNKHSA 226 78999*****************************************************986 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
ProDom	PD007478	5.0E-31	152	223	IPR003851	Zinc finger, Dof-type
Pfam	PF02701	3.2E-32	167	224	IPR003851	Zinc finger, Dof-type
PROSITE profile	PS50884	28.882	170	224	IPR003851	Zinc finger, Dof-type
PROSITE pattern	PS01361	0	172	208	IPR003851	Zinc finger, Dof-type

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 462 aa Download sequence Send to blast
MSEPRDPAIK LFGKTIPLPE SLPLPLPPAE AEDKEARPTD PAPQPDPAED GEKVRPDGPF 60 LIFIFVVFEG LDLERKSLFF SEKKVVFLAF ENKDSFLKRI RQDQRVVWNV PDEVNQRDPN 120 NSGLHNGNGD DNEAPNQDEK VAMDSKADHD KTEADSSGQE KVLKKPDKVL PCPRCNSMET 180 KFCYYNNYNV NQPRHFCKNC QRYWTAGGTM RNVPVGAGRR KNKHSASHYR HMMMSSDGLA 240 SGRVVAADLT PHQALPCGPS VPMRSMKGNG NVLKFGQEVP LCESMASVLN LGEQKKNADF 300 DSIACGENKE DPSCASSVTA SNCVENGFPE NAVPMEQNGM QGYCNGMTPM PHLQCYPGAH 360 WAYPWENGSP TPIPWSPPPM MPGPAFCAPT IPFPFMPASF WGWPNGAWNV AWFGANGGIS 420 PSSSTSNSGC SGNGSPTLGK HSRDASLQGE ETMEKSLSQL TL

Sequence ? help Back to Top

Protein Sequence Length: 462 aa Download sequence Send to blast

MSEPRDPAIK LFGKTIPLPE SLPLPLPPAE AEDKEARPTD PAPQPDPAED GEKVRPDGPF  60
LIFIFVVFEG LDLERKSLFF SEKKVVFLAF ENKDSFLKRI RQDQRVVWNV PDEVNQRDPN  120
NSGLHNGNGD DNEAPNQDEK VAMDSKADHD KTEADSSGQE KVLKKPDKVL PCPRCNSMET  180
KFCYYNNYNV NQPRHFCKNC QRYWTAGGTM RNVPVGAGRR KNKHSASHYR HMMMSSDGLA  240
SGRVVAADLT PHQALPCGPS VPMRSMKGNG NVLKFGQEVP LCESMASVLN LGEQKKNADF  300
DSIACGENKE DPSCASSVTA SNCVENGFPE NAVPMEQNGM QGYCNGMTPM PHLQCYPGAH  360
WAYPWENGSP TPIPWSPPPM MPGPAFCAPT IPFPFMPASF WGWPNGAWNV AWFGANGGIS  420
PSSSTSNSGC SGNGSPTLGK HSRDASLQGE ETMEKSLSQL TL

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_008781227.1	0.0	cyclic dof factor 3-like
TrEMBL	A0A2H3XBG3	0.0	A0A2H3XBG3_PHODC; cyclic dof factor 3-like
STRING	XP_008781227.1	0.0	(Phoenix dactylifera)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Monocots	OGMP1434	38	116

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G39660.2	7e-54	cycling DOF factor 2