PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | PDK_30s6550969g005 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Arecales; Arecaceae; Coryphoideae; Phoeniceae; Phoenix
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Family | GATA | ||||||||
Protein Properties | Length: 458aa MW: 51355.7 Da PI: 8.0555 | ||||||||
Description | GATA family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | GATA | 38.2 | 2e-12 | 18 | 46 | 7 | 35 |
GATA 7 tkTplWRrgpdgnktLCnaCGlyyrkkgl 35 t TplWR+gp ++ LCnaCG ++r kg+ PDK_30s6550969g005 18 TGTPLWRNGPPDKPVLCNACGSRWRTKGS 46 78********55555***********997 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SMART | SM00401 | 0.004 | 16 | 58 | IPR000679 | Zinc finger, GATA-type |
Pfam | PF00320 | 3.0E-10 | 17 | 46 | IPR000679 | Zinc finger, GATA-type |
SuperFamily | SSF57716 | 1.52E-6 | 17 | 50 | No hit | No description |
CDD | cd00202 | 4.26E-10 | 17 | 71 | No hit | No description |
Gene3D | G3DSA:3.30.50.10 | 1.4E-8 | 18 | 46 | IPR013088 | Zinc finger, NHR/GATA-type |
Pfam | PF13919 | 4.0E-10 | 285 | 369 | IPR028020 | ASX homology domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding | ||||
GO:0008270 | Molecular Function | zinc ion binding | ||||
GO:0043565 | Molecular Function | sequence-specific DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 458 aa Download sequence Send to blast |
MDLAVIVESQ LLKLNDSTGT PLWRNGPPDK PVLCNACGSR WRTKGSLTNY TPMHAREPID 60 SEELKVTKAK SISLKPKEQK LHKKKQSITT LGSEREIPYS DQNFRKIVDG DTSNRSSSGS 120 AISYSESCAH FGTTDASDMT GSAQSNVWDP LVPSKKRTGI ARPKPSPVEK LTKDLYTILH 180 DQQSSYQGSS EGDLLYESRT PMGSFEIGYG SVLIRHPNSK SMEEESEASS LPVDNKSYII 240 NEAYSGIASF PVHNESKGIS PSDSGNDKKS TAQVVQENAR RDKCSHDKLQ ILQDRESPLC 300 STDLQDVINF EEFTKYLTHE EQQRLMKYLP YTDTVKPPES LQSMFSSPHF VESLSHFQQL 360 LLEGIFDLSF SGSNIEECRT LKKFVLLNLT KFRWVEYYKQ LKDVKCKQIT EGKGMATRPK 420 FPGFSNSASL KRTRDGQNQN YPGLSSSTFL PSRSIEVI |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_008786183.1 | 0.0 | GATA transcription factor 27-like | ||||
TrEMBL | A0A2H3XNC0 | 0.0 | A0A2H3XNC0_PHODC; GATA transcription factor 27-like | ||||
STRING | XP_008786183.1 | 0.0 | (Phoenix dactylifera) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP4424 | 34 | 64 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT4G17570.3 | 2e-88 | GATA transcription factor 26 |