PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID PDK_30s6550969g005
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Arecales; Arecaceae; Coryphoideae; Phoeniceae; Phoenix
Family GATA
Protein Properties Length: 458aa    MW: 51355.7 Da    PI: 8.0555
Description GATA family protein
Gene Model
Gene Model ID Type Source Coding Sequence
PDK_30s6550969g005genomePDKView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1GATA38.22e-121846735
                GATA  7 tkTplWRrgpdgnktLCnaCGlyyrkkgl 35
                        t TplWR+gp  ++ LCnaCG ++r kg+
  PDK_30s6550969g005 18 TGTPLWRNGPPDKPVLCNACGSRWRTKGS 46
                        78********55555***********997 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM004010.0041658IPR000679Zinc finger, GATA-type
PfamPF003203.0E-101746IPR000679Zinc finger, GATA-type
SuperFamilySSF577161.52E-61750No hitNo description
CDDcd002024.26E-101771No hitNo description
Gene3DG3DSA:3.30.50.101.4E-81846IPR013088Zinc finger, NHR/GATA-type
PfamPF139194.0E-10285369IPR028020ASX homology domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0008270Molecular Functionzinc ion binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 458 aa     Download sequence    Send to blast
MDLAVIVESQ LLKLNDSTGT PLWRNGPPDK PVLCNACGSR WRTKGSLTNY TPMHAREPID  60
SEELKVTKAK SISLKPKEQK LHKKKQSITT LGSEREIPYS DQNFRKIVDG DTSNRSSSGS  120
AISYSESCAH FGTTDASDMT GSAQSNVWDP LVPSKKRTGI ARPKPSPVEK LTKDLYTILH  180
DQQSSYQGSS EGDLLYESRT PMGSFEIGYG SVLIRHPNSK SMEEESEASS LPVDNKSYII  240
NEAYSGIASF PVHNESKGIS PSDSGNDKKS TAQVVQENAR RDKCSHDKLQ ILQDRESPLC  300
STDLQDVINF EEFTKYLTHE EQQRLMKYLP YTDTVKPPES LQSMFSSPHF VESLSHFQQL  360
LLEGIFDLSF SGSNIEECRT LKKFVLLNLT KFRWVEYYKQ LKDVKCKQIT EGKGMATRPK  420
FPGFSNSASL KRTRDGQNQN YPGLSSSTFL PSRSIEVI
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_008786183.10.0GATA transcription factor 27-like
TrEMBLA0A2H3XNC00.0A0A2H3XNC0_PHODC; GATA transcription factor 27-like
STRINGXP_008786183.10.0(Phoenix dactylifera)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP44243464
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G17570.32e-88GATA transcription factor 26