PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | PDK_30s65509691g003 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Arecales; Arecaceae; Coryphoideae; Phoeniceae; Phoenix
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Family | AP2 | ||||||||
Protein Properties | Length: 364aa MW: 40626.7 Da PI: 10.094 | ||||||||
Description | AP2 family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | AP2 | 40.8 | 5.3e-13 | 29 | 85 | 1 | 55 |
AP2 1 sgykGVrwdkkrgrWvAeIrd.pseng.krkrfslgkfgtaeeAakaaiaarkkleg 55 s y+GV++++++gr++A+++d ++n+ ++k+ g ++ +e Aa+a++ a++k++g PDK_30s65509691g003 29 SIYRGVTRHRWTGRYEAHLWDkSTWNQnQNKKGKQGAYDDEEAAARAYDLAALKYWG 85 57*******************6666777775555599******************98 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF54171 | 7.85E-15 | 29 | 95 | IPR016177 | DNA-binding domain |
Pfam | PF00847 | 1.2E-8 | 29 | 85 | IPR001471 | AP2/ERF domain |
SMART | SM00380 | 2.1E-18 | 30 | 99 | IPR001471 | AP2/ERF domain |
Gene3D | G3DSA:3.30.730.10 | 7.3E-12 | 30 | 94 | IPR001471 | AP2/ERF domain |
PROSITE profile | PS51032 | 18.413 | 30 | 93 | IPR001471 | AP2/ERF domain |
PRINTS | PR00367 | 2.8E-5 | 31 | 42 | IPR001471 | AP2/ERF domain |
PRINTS | PR00367 | 2.8E-5 | 75 | 95 | IPR001471 | AP2/ERF domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0003677 | Molecular Function | DNA binding | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 364 aa Download sequence Send to blast |
MKKVRKERIC TAKERISRMP PCAAGKRSSI YRGVTRHRWT GRYEAHLWDK STWNQNQNKK 60 GKQGAYDDEE AAARAYDLAA LKYWGAGTLI NFPVSDYARD LEEMQTVSKE EFLVSLRRKS 120 SAFSRGFPKY RGLSRQPQST RWDASLGQMI GNEYCNNLNC STSRDVATDG KYAGSFGMER 180 KVDLTSYIRW WIPKKTRQSE STSNAEGAAR ELRTLECSVR PTEPYQLPSL GLPRKGKPHA 240 RGVSACSILS QSEAFKNFLE KSSKTSETKD DASYKDMEHG KAVPRFFSGG GLDRSGVSLG 300 LSELAVQRTP YAFAPPVSAP SRATWNSVDP VPDPVFWTSL VPPSGQSLTT MVQTLPATSY 360 PSNT |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Probably acts as a transcriptional activator. Binds to the GCC-box pathogenesis-related promoter element. May be involved in the regulation of gene expression by stress factors and by components of stress signal transduction pathways (By similarity). {ECO:0000250}. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_026665879.1 | 0.0 | AP2-like ethylene-responsive transcription factor At2g41710 | ||||
Swissprot | Q8GWK2 | 1e-112 | AP2L4_ARATH; AP2-like ethylene-responsive transcription factor At2g41710 | ||||
TrEMBL | A0A3Q0IG51 | 0.0 | A0A3Q0IG51_PHODC; AP2-like ethylene-responsive transcription factor At2g41710 | ||||
STRING | XP_008809562.1 | 0.0 | (Phoenix dactylifera) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP9200 | 31 | 36 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT2G41710.1 | 1e-110 | AP2 family protein |