PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | PDK_30s65509650g007 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Arecales; Arecaceae; Coryphoideae; Phoeniceae; Phoenix
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Family | MYB | ||||||||
Protein Properties | Length: 408aa MW: 44877.4 Da PI: 7.1201 | ||||||||
Description | MYB family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | Myb_DNA-binding | 61.8 | 1.4e-19 | 99 | 145 | 1 | 48 |
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 +g WT+eEd +lv++vkq+G + W+ Ia+++ gR++kqc++rw+++l PDK_30s65509650g007 99 KGQWTAEEDSILVRLVKQHGVRKWSQIAKKLV-GRSGKQCRERWHNHL 145 799*****************************.*************97 PP | |||||||
2 | Myb_DNA-binding | 59.8 | 6.1e-19 | 151 | 193 | 1 | 45 |
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHH CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwq 45 ++ WT+eE+ llv+a+k+ G++ W+ Ia++++ gR+++++k++w+ PDK_30s65509650g007 151 KDTWTEEEERLLVEAHKKVGNR-WAEIAKHIP-GRSENSIKNHWN 193 679*******************.*********.***********8 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS51294 | 29.587 | 94 | 149 | IPR017930 | Myb domain |
SuperFamily | SSF46689 | 5.64E-32 | 97 | 192 | IPR009057 | Homeodomain-like |
SMART | SM00717 | 1.2E-18 | 98 | 147 | IPR001005 | SANT/Myb domain |
Gene3D | G3DSA:1.10.10.60 | 9.3E-29 | 100 | 152 | IPR009057 | Homeodomain-like |
CDD | cd00167 | 3.37E-17 | 102 | 145 | No hit | No description |
Pfam | PF13921 | 7.3E-21 | 102 | 162 | No hit | No description |
PROSITE profile | PS51294 | 22.309 | 150 | 200 | IPR017930 | Myb domain |
SMART | SM00717 | 1.1E-18 | 150 | 198 | IPR001005 | SANT/Myb domain |
Gene3D | G3DSA:1.10.10.60 | 1.6E-21 | 153 | 198 | IPR009057 | Homeodomain-like |
CDD | cd00167 | 4.33E-15 | 153 | 196 | No hit | No description |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 408 aa Download sequence Send to blast |
METVSAGRID GLVEKNARSL RHAPPFTLLQ RFLASSCQGE LRLVKNPMDK LEQKAEIPFG 60 AIGVPTNGML LNDFSFYGDG NGVQSGSSAT VAAAATVVKG QWTAEEDSIL VRLVKQHGVR 120 KWSQIAKKLV GRSGKQCRER WHNHLRPDIK KDTWTEEEER LLVEAHKKVG NRWAEIAKHI 180 PGRSENSIKN HWNATKRRQN AKRKSKRKTA QGGRSRPSIL HEYVRSKMLD LKDNCATKIA 240 SSSAPSSPWH QHQITFPNVQ EPLSARDSSI STTTQMEDCM PFMEAFLDQS AAGSAEERGF 300 HAGDVQEPCM LDSLDVLDFD EGDYLIAGVD ECIEANGLTA AVSDGASTKS TACLFSDSYI 360 SYLLNGAPSS STDVFGSANA EILEDQTSSS SCKRELDLIE MIHGRTGI |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
1mse_C | 2e-45 | 97 | 199 | 2 | 104 | C-Myb DNA-Binding Domain |
1msf_C | 2e-45 | 97 | 199 | 2 | 104 | C-Myb DNA-Binding Domain |
Search in ModeBase |
Nucleic Localization Signal ? help Back to Top | |||
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No. | Start | End | Sequence |
1 | 195 | 206 | KRRQNAKRKSKR |
Binding Motif ? help Back to Top | |||
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Motif ID | Method | Source | Motif file |
MP00567 | DAP | Transfer from AT5G58850 | Download |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_010923245.1 | 0.0 | transcription factor MYB119-like | ||||
TrEMBL | M0REA4 | 1e-102 | M0REA4_MUSAM; Uncharacterized protein | ||||
STRING | XP_008785587.1 | 0.0 | (Phoenix dactylifera) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP1882 | 33 | 101 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G58850.1 | 1e-71 | myb domain protein 119 |