PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID PDK_30s6550963g005
Organism
Phoenix dactylifera
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Arecales; Arecaceae; Coryphoideae; Phoeniceae; Phoenix
Family MYB
Protein Properties Length: 408aa    MW: 45430 Da    PI: 8.0572
Description MYB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
PDK_30s6550963g005genomePDKView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding55.41.4e-171461148
                        TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS
     Myb_DNA-binding  1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48
                        +g W++eEde+l++ ++++G g+W+++++  g+ R++k+c++rw +yl
  PDK_30s6550963g005 14 KGLWSPEEDEKLLKHITKYGHGCWSSVPKLAGLQRCGKSCRLRWTNYL 61
                        678*******************************************97 PP
2Myb_DNA-binding44.53.7e-1467110146
                         TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHH CS
     Myb_DNA-binding   1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqk 46 
                         rg+++++E+ l++++++ lG++ W+ Ia+ ++ gRt++++k+ w++
  PDK_30s6550963g005  67 RGSFSQQEENLIIELHAALGNR-WSQIAAQLP-GRTDNEIKNLWNS 110
                         899*******************.*********.*********9986 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:1.10.10.602.3E-27664IPR009057Homeodomain-like
PROSITE profilePS5129425.171965IPR017930Myb domain
SuperFamilySSF466893.07E-2912108IPR009057Homeodomain-like
SMARTSM007171.4E-131363IPR001005SANT/Myb domain
PfamPF002492.2E-151461IPR001005SANT/Myb domain
CDDcd001672.67E-121761No hitNo description
Gene3DG3DSA:1.10.10.602.4E-2565116IPR009057Homeodomain-like
SMARTSM007171.4E-1266114IPR001005SANT/Myb domain
PROSITE profilePS5129419.87166116IPR017930Myb domain
PfamPF002493.4E-1367110IPR001005SANT/Myb domain
CDDcd001674.35E-969109No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 408 aa     Download sequence    Send to blast
MGRHSCCYKQ KLRKGLWSPE EDEKLLKHIT KYGHGCWSSV PKLAGLQRCG KSCRLRWTNY  60
LRPDLKRGSF SQQEENLIIE LHAALGNRWS QIAAQLPGRT DNEIKNLWNS CIKKKLRQRG  120
IDPNTHKPLS ETKGGEDKVL TISDKTSGSN ELKLLAPTSG NLSSIVPQPA PPSMSMADRN  180
QTERSSSKNF VTSTKDFSLD QFAAASHESS NSMDYFPLRN SVYSPNLSMH QNLPLWFNQN  240
SRLFDMNSEL NCGMISTAVP SGSRPIVSTS MDLKPIVSIA EEDSLPGFQY LEAGNSSNNS  300
ASTGNPSSGT ELQSNNSLFD SSIFQWPDLL LNKQAQIQLG AEPEDLKWSE YLNGAISPST  360
DFQNQSQLFN GSVKEENQFL TDGLSSWLQP PELFGKDLKK ISTAFKQI
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1a5j_A4e-29121165108B-MYB
Search in ModeBase
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankKX1220310.0KX122031.1 Phoenix dactylifera chromosome X transcription factor myb86-like protein (MYB1) gene, partial cds.
GenBankKX1220330.0KX122033.1 Phoenix dactylifera chromosome X transcription factor myb86-like protein (MYB1) gene, partial cds.
GenBankKX1220350.0KX122035.1 Phoenix sylvestris chromosome X transcription factor myb86-like protein (MYB1) gene, partial cds.
GenBankKX1220370.0KX122037.1 Phoenix atlantica chromosome X transcription factor myb86-like protein (MYB1) gene, partial cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_008775654.10.0transcription factor MYB61
TrEMBLA0A2H3WYL40.0A0A2H3WYL4_PHODC; transcription factor MYB61
STRINGXP_008775654.10.0(Phoenix dactylifera)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP23103794
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G01680.32e-88myb domain protein 55